{ "type": "genome", "identifier": "GCF_900459475.1", "organism": "Streptococcus equi subsp. zooepidemicus", "title": "Streptococcus equi subsp. zooepidemicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900459475.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3956096", "wgs_master": "UHFI00000000.1", "refseq_category": "na", "taxid": "40041", "species_taxid": "1336", "organism_name": "Streptococcus equi subsp. zooepidemicus", "infraspecific_name": "strain=NCTC4676", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "46463_D01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900459475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/459/475/GCF_900459475.1_46463_D01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2109071", "genome_size_ungapped": "2109071", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900459475.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2018", "protein_coding_gene_count": "1860", "non_coding_gene_count": "89", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus equi subsp. zooepidemicus" ], "sample_taxid": [ "40041" ], "sample_host_organism": [ "Cow" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: London" ], "sample_host_location_id": [], "data_size": "0.593 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2109071", "Number of Sequences": "2", "Longest Sequences (bp)": "2104860", "N50 (bp)": "2104860", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.8", "Number of CDSs": "1924", "Average Protein Length": "304.5", "Coding Ratio (%)": "83.3", "Number of rRNAs": "18", "Number of tRNAs": "67", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus equi subsp. zooepidemicus", "strain": "strain=NCTC4676", "accession": "GCA_900459475.1", "taxid": 40041, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 700, "total_fragments": 702, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus equi", "strain": "strain=DSM 20561", "accession": "GCA_900110405.1", "taxid": 1336, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 97.1101, "matched_fragments": 567, "total_fragments": 702, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus equi", "strain": "strain=ATCC 33398", "accession": "GCA_900156215.1", "taxid": 1336, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 97.1029, "matched_fragments": 574, "total_fragments": 702, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus equi subsp. zooepidemicus", "strain": "strain=NCTC7023", "accession": "GCA_900460185.1", "taxid": 40041, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 96.7305, "matched_fragments": 629, "total_fragments": 702, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus equi subsp. ruminatorum", "strain": "strain=CECT 5772", "accession": "GCA_000706805.1", "taxid": 254358, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 96.1086, "matched_fragments": 573, "total_fragments": 702, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 80.0357, "matched_fragments": 63, "total_fragments": 702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus porcinus", "strain": "strain=NCTC10999", "accession": "GCA_900475415.1", "taxid": 1340, "species_taxid": 1340, "relation_to_type": "type", "validated": true, "ani": 79.9741, "matched_fragments": 139, "total_fragments": 702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pyogenes", "strain": "strain=PartK-Spyogenes-RM8376", "accession": "GCA_022869605.1", "taxid": 1314, "species_taxid": 1314, "relation_to_type": "type", "validated": true, "ani": 79.086, "matched_fragments": 225, "total_fragments": 702, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900637675.1", "gtdb_species": "s__Streptococcus equi", "ani": 97.0799, "matched_fragments": 610, "total_fragments": 702, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.36", "min_intra_species_ani": "95.16", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.81", "num_clustered_genomes": 392, "status": "conclusive" }, { "accession": "GCF_000186445.1", "gtdb_species": "s__Streptococcus agalactiae", "ani": 80.4469, "matched_fragments": 89, "total_fragments": 702, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "98.18", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.63", "num_clustered_genomes": 1516, "status": "-" }, { "accession": "GCF_900459225.1", "gtdb_species": "s__Streptococcus dysgalactiae", "ani": 80.1325, "matched_fragments": 227, "total_fragments": 702, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.02", "min_intra_species_ani": "95.49", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.78", "num_clustered_genomes": 121, "status": "-" }, { "accession": "GCF_900475415.1", "gtdb_species": "s__Streptococcus porcinus", "ani": 80.0221, "matched_fragments": 140, 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