{ "type": "genome", "identifier": "GCF_900460065.1", "organism": "Streptomyces griseus", "title": "Streptomyces griseus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900460065.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3724098", "wgs_master": "UAVD00000000.1", "refseq_category": "na", "taxid": "1911", "species_taxid": "1911", "organism_name": "Streptomyces griseus", "infraspecific_name": "strain=NCTC13033", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/30", "asm_name": "43874_D01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900460065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/460/065/GCF_900460065.1_43874_D01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8528890", "genome_size_ungapped": "8528890", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "60", "contig_count": "60", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900460065.1-RS_2024_08_15", "annotation_date": "2024-08-15", "total_gene_count": "7287", "protein_coding_gene_count": "7047", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-30", "dateModified": "2018-06-30", "datePublished": "2018-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces griseus" ], "sample_taxid": [ "1911" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "2.279 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8528890", "Number of Sequences": "60", "Longest Sequences (bp)": "670701", "N50 (bp)": "302173", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.2", "Number of CDSs": "7255", "Average Protein Length": "339.8", "Coding Ratio (%)": "86.7", "Number of rRNAs": "16", "Number of tRNAs": "80", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces griseus", "strain": "strain=NCTC13033", "accession": "GCA_900460065.1", "taxid": 1911, "species_taxid": 1911, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2803, "total_fragments": 2811, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces griseus", "strain": "strain=DSM 40236", "accession": "GCA_900105705.1", "taxid": 1911, "species_taxid": 1911, "relation_to_type": "type", "validated": true, "ani": 99.9989, "matched_fragments": 2803, "total_fragments": 2811, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces anulatus", "strain": "strain=JCM 4721", "accession": "GCA_014650675.1", "taxid": 1892, "species_taxid": 1892, "relation_to_type": "type", "validated": true, "ani": 93.3577, "matched_fragments": 2259, "total_fragments": 2811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces parvus", "strain": "strain=JCM 4069", "accession": "GCA_014648875.1", "taxid": 66428, "species_taxid": 66428, "relation_to_type": "type", "validated": true, "ani": 91.5074, "matched_fragments": 2079, "total_fragments": 2811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sindenensis", "strain": "strain=JCM 4164", "accession": "GCA_014649035.1", "taxid": 67363, "species_taxid": 67363, "relation_to_type": "type", "validated": true, "ani": 91.3764, "matched_fragments": 2009, "total_fragments": 2811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces parvus", "strain": "strain=NRRL B-1455", "accession": "GCA_008632535.1", "taxid": 66428, "species_taxid": 66428, "relation_to_type": "type", "validated": true, "ani": 91.3661, "matched_fragments": 1892, "total_fragments": 2811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces badius", "strain": "strain=JCM 4350", "accession": "GCA_014649415.1", "taxid": 1941, "species_taxid": 1941, "relation_to_type": "type", "validated": true, "ani": 91.234, "matched_fragments": 1997, "total_fragments": 2811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces californicus", "strain": "strain=NRRL B-2098", "accession": "GCA_000717645.1", "taxid": 67351, "species_taxid": 67351, "relation_to_type": "type", "validated": true, "ani": 90.1426, "matched_fragments": 2001, "total_fragments": 2811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces californicus", "strain": "strain=FDAARGOS_1209", "accession": "GCA_016906185.1", "taxid": 67351, "species_taxid": 67351, "relation_to_type": "type", "validated": true, "ani": 90.1328, "matched_fragments": 2055, "total_fragments": 2811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rhizosphaericola", "strain": "strain=1AS2c", "accession": "GCA_004794175.1", "taxid": 2564098, "species_taxid": 2564098, "relation_to_type": "type", "validated": true, "ani": 88.5446, "matched_fragments": 1585, "total_fragments": 2811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Kitasatospora] papulosa", "strain": "strain=NRRL B-16504", "accession": "GCA_000717245.1", "taxid": 1464011, "species_taxid": 1464011, "relation_to_type": "type", "validated": true, "ani": 84.5874, "matched_fragments": 1615, "total_fragments": 2811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lichenis", "strain": "strain=LCR6-01", "accession": "GCA_023218175.1", "taxid": 2306967, "species_taxid": 2306967, "relation_to_type": "type", "validated": true, "ani": 82.4376, "matched_fragments": 1399, "total_fragments": 2811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces panaciradicis", "strain": "strain=NBRC 109811", "accession": "GCA_023516615.1", "taxid": 1470261, "species_taxid": 1470261, "relation_to_type": "type", "validated": true, "ani": 81.0872, "matched_fragments": 1327, "total_fragments": 2811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces blattellae", "strain": "strain=TRM63209", "accession": "GCA_009709555.1", "taxid": 2569855, "species_taxid": 2569855, "relation_to_type": "type", "validated": true, "ani": 81.0381, "matched_fragments": 1238, "total_fragments": 2811, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900460065.1", "gtdb_species": "s__Streptomyces griseus", "ani": 100.0, "matched_fragments": 2803, "total_fragments": 2811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.49", "min_intra_species_ani": "99.03", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCF_018619185.1", "gtdb_species": "s__Streptomyces sp018619185", "ani": 94.0793, "matched_fragments": 2081, "total_fragments": 2811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000377965.1", "gtdb_species": "s__Streptomyces sp000377965", "ani": 93.371, "matched_fragments": 2130, "total_fragments": 2811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014650675.1", "gtdb_species": "s__Streptomyces anulatus", "ani": 93.3497, "matched_fragments": 2260, "total_fragments": 2811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.62", "min_intra_species_ani": "96.42", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.81", "num_clustered_genomes": 27, "status": "-" }, { "accession": "GCF_002551245.1", "gtdb_species": "s__Streptomyces sp002551245", "ani": 92.9026, "matched_fragments": 1842, "total_fragments": 2811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014649875.1", "gtdb_species": "s__Streptomyces rubiginosohelvolus", "ani": 91.8654, "matched_fragments": 2073, "total_fragments": 2811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 96.2941, "mean_intra_species_ani": "98.09", "min_intra_species_ani": "96.67", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 22, "status": "-" }, { "accession": "GCF_001687325.1", "gtdb_species": "s__Streptomyces sp001687325", "ani": 91.7755, "matched_fragments": 2027, "total_fragments": 2811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003501885.1", "gtdb_species": "s__Streptomyces globisporus_D", "ani": 91.749, "matched_fragments": 1820, "total_fragments": 2811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.6693, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002154345.1", "gtdb_species": "s__Streptomyces fimicarius", "ani": 91.7201, "matched_fragments": 1776, "total_fragments": 2811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.88", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.81", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCA_014649555.1", "gtdb_species": "s__Streptomyces globisporus", "ani": 91.6562, "matched_fragments": 2078, "total_fragments": 2811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 96.2941, "mean_intra_species_ani": "98.88", "min_intra_species_ani": "97.57", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.86", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_002910905.1", "gtdb_species": "s__Streptomyces sp002910905", "ani": 91.5663, "matched_fragments": 1877, "total_fragments": 2811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014648875.1", "gtdb_species": "s__Streptomyces parvus", "ani": 91.4825, "matched_fragments": 2082, "total_fragments": 2811, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.2347, "mean_intra_species_ani": "97.39", "min_intra_species_ani": "96.11", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.79", "num_clustered_genomes": 24, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 28.0, "optimum_tmp": 30.0, "optimum_ph": 9.0, "genome_size": 7984538.217, "gc_content": 72.045, "coding_genes": 7013.333, "rRNA16S_genes": 6.0, "tRNA_genes": 66.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 1.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptomyces", "griseus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }