{ "type": "genome", "identifier": "GCF_900460345.1", "organism": "Trueperella pyogenes", "title": "Trueperella pyogenes", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900460345.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4535748", "wgs_master": "UHHW00000000.1", "refseq_category": "na", "taxid": "1661", "species_taxid": "1661", "organism_name": "Trueperella pyogenes", "infraspecific_name": "strain=NCTC5224", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "52223_D01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900460345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/460/345/GCF_900460345.1_52223_D01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2310711", "genome_size_ungapped": "2310711", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900460345.1-RS_2024_08_15", "annotation_date": "2024-08-15", "total_gene_count": "2115", "protein_coding_gene_count": "2019", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Trueperella pyogenes" ], "sample_taxid": [ "1661" ], "sample_host_organism": [ "Pig" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [ "Australia" ], "sample_host_location_id": [], "data_size": "0.655 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2310711", "Number of Sequences": "5", "Longest Sequences (bp)": "2269745", "N50 (bp)": "2269745", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.6", "Number of CDSs": "2097", "Average Protein Length": "328.7", "Coding Ratio (%)": "89.5", "Number of rRNAs": "9", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Trueperella pyogenes", "strain": "strain=NCTC5224", "accession": "GCA_900460345.1", "taxid": 1661, "species_taxid": 1661, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 767, "total_fragments": 767, "ani_threshold": 95, "status": "conclusive" }, { 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"strain=NCTC13354", "accession": "GCA_900637955.1", "taxid": 312285, "species_taxid": 312285, "relation_to_type": "type", "validated": true, "ani": 77.979, "matched_fragments": 139, "total_fragments": 767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces respiraculi", "strain": "strain=ZJ750", "accession": "GCA_014595995.2", "taxid": 2744574, "species_taxid": 2744574, "relation_to_type": "type", "validated": true, "ani": 76.919, "matched_fragments": 74, "total_fragments": 767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella kanbiaonis", "strain": "strain=HY164", "accession": "GCA_009708215.1", "taxid": 2675754, "species_taxid": 2675754, "relation_to_type": "type", "validated": true, "ani": 76.8474, "matched_fragments": 55, "total_fragments": 767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia subflava", "strain": "strain=JCM 19765", "accession": "GCA_009362315.1", "taxid": 1622177, 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