{
    "type": "genome",
    "identifier": "GCF_900460385.1",
    "organism": "Vibrio mimicus",
    "title": "Vibrio mimicus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "SC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900460385.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA3643325",
        "wgs_master": "UHIG00000000.1",
        "refseq_category": "reference genome",
        "taxid": "674",
        "species_taxid": "674",
        "organism_name": "Vibrio mimicus",
        "infraspecific_name": "strain=NCTC11435",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/08/01",
        "asm_name": "42650_F01",
        "asm_submitter": "SC",
        "gbrs_paired_asm": "GCA_900460385.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/460/385/GCF_900460385.1_42650_F01",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4443087",
        "genome_size_ungapped": "4443087",
        "gc_percent": "46.500000",
        "replicon_count": "0",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900460385.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "4127",
        "protein_coding_gene_count": "3920",
        "non_coding_gene_count": "147",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-08-01",
    "dateModified": "2018-08-01",
    "datePublished": "2018-08-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Vibrio mimicus"
        ],
        "sample_taxid": [
            "674"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "not available: to be reported later"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: North Carolina (State)"
        ],
        "sample_host_location_id": [],
        "data_size": "1.251 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4443087",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "2982507",
        "N50 (bp)": "2982507",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.3",
        "Number of CDSs": "3905",
        "Average Protein Length": "325.4",
        "Coding Ratio (%)": "85.8",
        "Number of rRNAs": "34",
        "Number of tRNAs": "109",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Vibrio mimicus",
                "strain": "strain=NCTC11435",
                "accession": "GCA_900460385.1",
                "taxid": 674,
                "species_taxid": 674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1472,
                "total_fragments": 1480,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Vibrio mimicus",
                "strain": "strain=CAIM 602",
                "accession": "GCA_000338875.1",
                "taxid": 674,
                "species_taxid": 674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9309,
                "matched_fragments": 1374,
                "total_fragments": 1480,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Vibrio metoecus",
                "strain": "strain=OP3H",
                "accession": "GCA_000696385.1",
                "taxid": 1481663,
                "species_taxid": 1481663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.6307,
                "matched_fragments": 1063,
                "total_fragments": 1480,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio tarriae",
                "strain": "strain=2521-89",
                "accession": "GCA_002216685.1",
                "taxid": 2014742,
                "species_taxid": 2014742,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.165,
                "matched_fragments": 1110,
                "total_fragments": 1480,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio cholerae",
                "strain": "strain=ATCC 14035",
                "accession": "GCA_000621645.1",
                "taxid": 666,
                "species_taxid": 666,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.5152,
                "matched_fragments": 1036,
                "total_fragments": 1480,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio paracholerae",
                "strain": "strain=EDC-792",
                "accession": "GCA_017169525.1",
                "taxid": 650003,
                "species_taxid": 650003,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3346,
                "matched_fragments": 993,
                "total_fragments": 1480,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio furnissii",
                "strain": "strain=PartQ-Vfurnissii-RM8376",
                "accession": "GCA_022869905.1",
                "taxid": 29494,
                "species_taxid": 29494,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8607,
                "matched_fragments": 545,
                "total_fragments": 1480,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio panuliri",
                "strain": "strain=JCM 19500",
                "accession": "GCA_009938205.1",
                "taxid": 1381081,
                "species_taxid": 1381081,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2433,
                "matched_fragments": 310,
                "total_fragments": 1480,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio natriegens",
                "strain": "strain=14048",
                "accession": "GCA_024508015.1",
                "taxid": 691,
                "species_taxid": 691,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1254,
                "matched_fragments": 343,
                "total_fragments": 1480,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio panuliri",
                "strain": "strain=LBS 2",
                "accession": "GCA_008830195.1",
                "taxid": 1381081,
                "species_taxid": 1381081,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.896,
                "matched_fragments": 310,
                "total_fragments": 1480,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000338875.1",
                "gtdb_species": "s__Vibrio mimicus",
                "ani": 99.9309,
                "matched_fragments": 1374,
                "total_fragments": 1480,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.40",
                "min_intra_species_ani": "96.81",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 26,
                "status": "conclusive"
            },
            {
                "accession": "GCF_019048845.1",
                "gtdb_species": "s__Vibrio sp000176715",
                "ani": 89.7486,
                "matched_fragments": 1123,
                "total_fragments": 1480,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.20",
                "min_intra_species_ani": "96.20",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009665255.1",
                "gtdb_species": "s__Vibrio metoecus_B",
                "ani": 88.5687,
                "matched_fragments": 1107,
                "total_fragments": 1480,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.11",
                "min_intra_species_ani": "98.11",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000696385.1",
                "gtdb_species": "s__Vibrio metoecus",
                "ani": 87.6307,
                "matched_fragments": 1063,
                "total_fragments": 1480,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.79",
                "min_intra_species_ani": "97.58",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 26,
                "status": "-"
            },
            {
                "accession": "GCF_001471585.2",
                "gtdb_species": "s__Vibrio cholerae",
                "ani": 86.6884,
                "matched_fragments": 1066,
                "total_fragments": 1480,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.72",
                "min_intra_species_ani": "95.09",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 1544,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.18,
        "cell_length": 0.215,
        "doubling_h": -0.527,
        "growth_tmp": 32.0,
        "optimum_tmp": 28.0,
        "optimum_ph": 7.4,
        "genome_size": 4287975.61,
        "gc_content": 46.387,
        "coding_genes": 3925.667,
        "rRNA16S_genes": 9.5,
        "tRNA_genes": 103.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Vibrio",
        "mimicus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}