{ "type": "genome", "identifier": "GCF_900460565.1", "organism": "Vibrio vulnificus", "title": "Vibrio vulnificus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900460565.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3121336", "wgs_master": "UHIW00000000.1", "refseq_category": "na", "taxid": "672", "species_taxid": "672", "organism_name": "Vibrio vulnificus", "infraspecific_name": "strain=NCTC13647", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "34500_C01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900460565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/460/565/GCF_900460565.1_34500_C01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4988619", "genome_size_ungapped": "4988619", "gc_percent": "46.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900460565.1-RS_2024_07_31", "annotation_date": "2024-07-31", "total_gene_count": "4535", "protein_coding_gene_count": "4187", "non_coding_gene_count": "156", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio vulnificus" ], "sample_taxid": [ "672" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.405 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4988619", "Number of Sequences": "2", "Longest Sequences (bp)": "3251517", "N50 (bp)": "3251517", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.7", "Number of CDSs": "4356", "Average Protein Length": "327.1", "Coding Ratio (%)": "85.7", "Number of rRNAs": "34", "Number of tRNAs": "118", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio vulnificus", "strain": "strain=NCTC13647", "accession": "GCA_900460565.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1660, "total_fragments": 1662, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio vulnificus", "strain": "strain=ATCC 27562", "accession": "GCA_002224265.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "type", "validated": true, "ani": 99.9914, "matched_fragments": 1651, "total_fragments": 1662, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio vulnificus", "strain": "strain=NBRC 15645", "accession": "GCA_001591065.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "type", "validated": true, "ani": 99.9579, "matched_fragments": 1562, "total_fragments": 1662, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio vulnificus", "strain": "strain=ATCC 27562", "accession": "GCA_000299635.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9547, "matched_fragments": 1372, "total_fragments": 1662, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio cidicii", "strain": "strain=2756-81", "accession": "GCA_009763805.1", "taxid": 1763883, "species_taxid": 1763883, "relation_to_type": "type", "validated": true, "ani": 81.8782, "matched_fragments": 757, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio navarrensis", "strain": "strain=ATCC 51183", "accession": "GCA_000764325.1", "taxid": 29495, "species_taxid": 29495, "relation_to_type": "type", "validated": true, "ani": 81.3619, "matched_fragments": 727, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio owensii", "strain": "strain=DY05", "accession": "GCA_000817815.1", "taxid": 696485, "species_taxid": 696485, "relation_to_type": "type", "validated": true, "ani": 80.5205, "matched_fragments": 580, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 80.3172, "matched_fragments": 382, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=LBS 2", "accession": "GCA_008830195.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 80.1047, "matched_fragments": 372, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio furnissii", "strain": "strain=PartQ-Vfurnissii-RM8376", "accession": "GCA_022869905.1", "taxid": 29494, "species_taxid": 29494, "relation_to_type": "type", "validated": true, "ani": 79.7868, "matched_fragments": 461, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 21557", "accession": "GCA_024347475.1", "taxid": 212667, "species_taxid": 212667, "relation_to_type": "type", "validated": true, "ani": 79.7589, "matched_fragments": 410, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cholerae", "strain": "strain=ATCC 14035", "accession": "GCA_000621645.1", "taxid": 666, "species_taxid": 666, "relation_to_type": "type", "validated": true, "ani": 78.9079, "matched_fragments": 395, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002224265.1", "gtdb_species": "s__Vibrio vulnificus", "ani": 99.9914, "matched_fragments": 1649, "total_fragments": 1662, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.11", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 225, "status": "conclusive" }, { "accession": "GCF_013369385.1", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Vibrio", "vulnificus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }