{ "type": "genome", "identifier": "GCF_900460805.1", "organism": "Yokenella regensburgei", "title": "Yokenella regensburgei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900460805.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4362431", "wgs_master": "UHJH00000000.1", "refseq_category": "na", "taxid": "158877", "species_taxid": "158877", "organism_name": "Yokenella regensburgei", "infraspecific_name": "strain=NCTC11966", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "50377_A01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900460805.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/460/805/GCF_900460805.1_50377_A01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4937525", "genome_size_ungapped": "4937525", "gc_percent": "55.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900460805.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4757", "protein_coding_gene_count": "4577", "non_coding_gene_count": "117", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Yokenella regensburgei" ], "sample_taxid": [ "158877" ], "sample_host_organism": [ "Insect" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.396 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4937525", "Number of Sequences": "2", "Longest Sequences (bp)": "4916125", "N50 (bp)": "4916125", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.8", "Number of CDSs": "4673", "Average Protein Length": "312.3", "Coding Ratio (%)": "88.7", "Number of rRNAs": "22", "Number of tRNAs": "93", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Yokenella regensburgei", "strain": "strain=NCTC11966", "accession": "GCA_900460805.1", "taxid": 158877, "species_taxid": 158877, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1644, "total_fragments": 1645, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Yokenella regensburgei", "strain": "strain=ATCC 49455", "accession": "GCA_000735455.1", "taxid": 158877, "species_taxid": 158877, "relation_to_type": "type", "validated": true, "ani": 99.9502, "matched_fragments": 1577, "total_fragments": 1645, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 82.1728, "matched_fragments": 927, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 82.1225, "matched_fragments": 895, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. oharae", "strain": "strain=FDAARGOS_1533", "accession": "GCA_020097195.1", "taxid": 301102, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 82.1058, "matched_fragments": 902, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. hormaechei", "strain": "strain=ATCC 49162", "accession": "GCA_001875655.1", "taxid": 301105, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 82.1057, "matched_fragments": 886, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter chengduensis", "strain": "strain=WCHECl-C4 = WCHECh050004", "accession": "GCA_001984825.2", "taxid": 2494701, "species_taxid": 2494701, "relation_to_type": "type", "validated": true, "ani": 82.0837, "matched_fragments": 941, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. steigerwaltii", "strain": "strain=DSM 16691", "accession": "GCA_001729725.1", "taxid": 299766, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 82.0676, "matched_fragments": 909, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter oligotrophicus", "strain": "strain=CCA6", "accession": "GCA_009176645.1", "taxid": 2478464, "species_taxid": 2478464, "relation_to_type": "type", "validated": true, "ani": 81.9777, "matched_fragments": 908, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella quasipneumoniae subsp. quasipneumoniae", "strain": "strain=01A030T", "accession": "GCA_020525925.1", "taxid": 1667327, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 81.9742, "matched_fragments": 916, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocitrobacter corydidari", "strain": "", "accession": "GCA_021172065.1", "taxid": 2891570, "species_taxid": 2891570, "relation_to_type": "type", "validated": true, "ani": 81.9179, "matched_fragments": 918, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera sichuanensis", "strain": "strain=090646", "accession": "GCA_014218705.1", "taxid": 2725494, "species_taxid": 2725494, "relation_to_type": "type", "validated": true, "ani": 81.9115, "matched_fragments": 925, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 81.8741, "matched_fragments": 941, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kluyvera ascorbata", "strain": "strain=ATCC 33433", "accession": "GCA_000735365.1", "taxid": 51288, "species_taxid": 51288, "relation_to_type": "suspected-type", "validated": true, "ani": 81.8471, "matched_fragments": 857, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 81.8075, "matched_fragments": 899, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella oxytoca", "strain": "strain=NCTC13727", "accession": "GCA_900636985.1", "taxid": 571, "species_taxid": 571, "relation_to_type": "type", "validated": true, "ani": 81.3591, "matched_fragments": 911, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella oxytoca", "strain": "strain=NBRC 105695", "accession": "GCA_001598695.1", "taxid": 571, "species_taxid": 571, "relation_to_type": "type", "validated": true, "ani": 81.2426, "matched_fragments": 900, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella oxytoca", "strain": "strain=DSM 5175", "accession": "GCA_020115535.1", "taxid": 571, "species_taxid": 571, "relation_to_type": "type", "validated": true, "ani": 81.2169, "matched_fragments": 891, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pluralibacter gergoviae", "strain": "strain=NBRC 105706", "accession": "GCA_001598855.1", "taxid": 61647, "species_taxid": 61647, "relation_to_type": "type", "validated": true, "ani": 81.0554, "matched_fragments": 861, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salmonella enterica subsp. enterica", "strain": "strain=LT2", "accession": "GCA_002289225.1", "taxid": 59201, "species_taxid": 28901, "relation_to_type": "type", 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"vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Yokenella", "regensburgei" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }