{ "type": "genome", "identifier": "GCF_900460885.1", "organism": "Campylobacter ureolyticus", "title": "Campylobacter ureolyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900460885.1", "bioproject": "PRJNA224116", "biosample": "SAMEA87358168", "wgs_master": "UFUU00000000.1", "refseq_category": "na", "taxid": "827", "species_taxid": "827", "organism_name": "Campylobacter ureolyticus", "infraspecific_name": "strain=NCTC10941", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/07", "asm_name": "53694_D01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900460885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/460/885/GCF_900460885.1_53694_D01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1833655", "genome_size_ungapped": "1833655", "gc_percent": "29.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900460885.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "1871", "protein_coding_gene_count": "1783", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-07", "dateModified": "2018-08-07", "datePublished": "2018-08-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Campylobacter ureolyticus" ], "sample_taxid": [ "827" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Alberta" ], "sample_host_location_id": [], "data_size": "0.489 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1833655", "Number of Sequences": "2", "Longest Sequences (bp)": "1827094", "N50 (bp)": "1827094", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.0", "Number of CDSs": "1818", "Average Protein Length": "306.2", "Coding Ratio (%)": "91.1", "Number of rRNAs": "8", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Campylobacter ureolyticus", "strain": "strain=NCTC10941", "accession": "GCA_900460885.1", "taxid": 827, "species_taxid": 827, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 607, "total_fragments": 611, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Campylobacter ureolyticus", "strain": "strain=LMG 6451", "accession": "GCA_013372225.1", "taxid": 827, "species_taxid": 827, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9988, "matched_fragments": 601, "total_fragments": 611, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Campylobacter ureolyticus", "strain": "strain=FDAARGOS_1102", "accession": "GCA_016766895.1", "taxid": 827, "species_taxid": 827, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9977, "matched_fragments": 598, "total_fragments": 611, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Campylobacter ureolyticus", "strain": "strain=DSM 20703", "accession": "GCA_000374605.1", "taxid": 827, "species_taxid": 827, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9696, "matched_fragments": 560, "total_fragments": 611, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": 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"num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002220775.1", "gtdb_species": "s__Campylobacter_B sputorum_B", "ani": 77.7836, "matched_fragments": 156, "total_fragments": 611, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.55", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.90", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_008245005.1", "gtdb_species": "s__Campylobacter_B sputorum", "ani": 77.7107, "matched_fragments": 151, "total_fragments": 611, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.49", "min_intra_species_ani": "98.05", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.93", 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"num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017934385.1", "gtdb_species": "s__Campylobacter_B sp017934385", "ani": 75.2403, "matched_fragments": 58, "total_fragments": 611, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.176, "doubling_h": 0.058, "growth_tmp": 37.0, "optimum_tmp": 36.5, "optimum_ph": 7.0, "genome_size": 1677447.333, "gc_content": 29.133, "coding_genes": 1594.0, "rRNA16S_genes": 3.0, "tRNA_genes": 43.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, 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