{
    "type": "genome",
    "identifier": "GCF_900460955.1",
    "organism": "Cardiobacterium valvarum",
    "title": "Cardiobacterium valvarum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "SC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900460955.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA4412709",
        "wgs_master": "UFUW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "194702",
        "species_taxid": "194702",
        "organism_name": "Cardiobacterium valvarum",
        "infraspecific_name": "strain=NCTC13294",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/08/07",
        "asm_name": "51726_F01",
        "asm_submitter": "SC",
        "gbrs_paired_asm": "GCA_900460955.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/460/955/GCF_900460955.1_51726_F01",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2755518",
        "genome_size_ungapped": "2755518",
        "gc_percent": "58.000000",
        "replicon_count": "0",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900460955.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "2752",
        "protein_coding_gene_count": "2590",
        "non_coding_gene_count": "65",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-08-07",
    "dateModified": "2018-08-07",
    "datePublished": "2018-08-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cardiobacterium valvarum"
        ],
        "sample_taxid": [
            "194702"
        ],
        "sample_host_organism": [
            "not available"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "disease"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.763 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 85.01,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2755518",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "2750774",
        "N50 (bp)": "2750774",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.0",
        "Number of CDSs": "2685",
        "Average Protein Length": "301.2",
        "Coding Ratio (%)": "88.1",
        "Number of rRNAs": "9",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Cardiobacterium valvarum",
                "strain": "strain=NCTC13294",
                "accession": "GCA_900460955.1",
                "taxid": 194702,
                "species_taxid": 194702,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 916,
                "total_fragments": 917,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Cardiobacterium hominis",
                "strain": "strain=ATCC 15826",
                "accession": "GCA_000160655.1",
                "taxid": 2718,
                "species_taxid": 2718,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8944,
                "matched_fragments": 529,
                "total_fragments": 917,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cardiobacterium hominis",
                "strain": "strain=NCTC10426",
                "accession": "GCA_900637305.1",
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                "species_taxid": 2718,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7525,
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                "total_fragments": 917,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas hydrolytica",
                "strain": "strain=DSWY01",
                "accession": "GCA_021495345.2",
                "taxid": 2493633,
                "species_taxid": 2493633,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4176,
                "matched_fragments": 50,
                "total_fragments": 917,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiobacillus denitrificans",
                "strain": "strain=DSM 12475",
                "accession": "GCA_000376425.1",
                "taxid": 36861,
                "species_taxid": 36861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3113,
                "matched_fragments": 51,
                "total_fragments": 917,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas tohonis",
                "strain": "strain=TUM18999",
                "accession": "GCA_012767755.2",
                "taxid": 2725477,
                "species_taxid": 2725477,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2877,
                "matched_fragments": 76,
                "total_fragments": 917,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas knackmussii",
                "strain": "strain=B13",
                "accession": "GCA_000689415.1",
                "taxid": 65741,
                "species_taxid": 65741,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9756,
                "matched_fragments": 70,
                "total_fragments": 917,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 85.01,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_900460955.1",
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                "matched_fragments": 914,
                "total_fragments": 917,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Cardiobacteriales;f__Cardiobacteriaceae;g__Cardiobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.68",
                "min_intra_species_ani": "96.66",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900637305.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Cardiobacteriales;f__Cardiobacteriaceae;g__Cardiobacterium",
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                "mean_intra_species_ani": "97.41",
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                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_000376425.1",
                "gtdb_species": "s__Thiobacillus denitrificans",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004341245.1",
                "gtdb_species": "s__Plasticicumulans_A lactativorans",
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                "matched_fragments": 66,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__Plasticicumulans_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018240295.1",
                "gtdb_species": "s__Plasticicumulans sp003962905",
                "ani": 75.1887,
                "matched_fragments": 51,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__Plasticicumulans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.50",
                "min_intra_species_ani": "98.50",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 36.0,
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        "genome_size": 2547857.0,
        "gc_content": 59.3,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": null,
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        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
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        "valvarum"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}