{
    "type": "genome",
    "identifier": "GCF_900461185.1",
    "organism": "Corynebacterium jeikeium",
    "title": "Corynebacterium jeikeium",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "SC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900461185.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA4017703",
        "wgs_master": "UFXO00000000.1",
        "refseq_category": "na",
        "taxid": "38289",
        "species_taxid": "38289",
        "organism_name": "Corynebacterium jeikeium",
        "infraspecific_name": "strain=NCTC11913",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/08/07",
        "asm_name": "48853_B02",
        "asm_submitter": "SC",
        "gbrs_paired_asm": "GCA_900461185.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/461/185/GCF_900461185.1_48853_B02",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2526027",
        "genome_size_ungapped": "2526027",
        "gc_percent": "61.500000",
        "replicon_count": "0",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900461185.1-RS_2024_08_16",
        "annotation_date": "2024-08-16",
        "total_gene_count": "2277",
        "protein_coding_gene_count": "2166",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-08-07",
    "dateModified": "2018-08-07",
    "datePublished": "2018-08-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium jeikeium"
        ],
        "sample_taxid": [
            "38289"
        ],
        "sample_host_organism": [
            "not available"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "disease"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.710 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2526027",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "2516825",
        "N50 (bp)": "2516825",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.4",
        "Number of CDSs": "2228",
        "Average Protein Length": "336.0",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "9",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Corynebacterium jeikeium",
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                "accession": "GCA_900461185.1",
                "taxid": 38289,
                "species_taxid": 38289,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 838,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium jeikeium",
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                "accession": "GCA_001999385.1",
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                "species_taxid": 38289,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 769,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium jeikeium",
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                "species_taxid": 38289,
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                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium urealyticum",
                "strain": "strain=NCTC12011",
                "accession": "GCA_900187235.1",
                "taxid": 43771,
                "species_taxid": 43771,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1978,
                "matched_fragments": 320,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium urealyticum",
                "strain": "strain=FDAARGOS_994",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0812,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium falsenii",
                "strain": "strain=FDAARGOS_1494",
                "accession": "GCA_020099275.1",
                "taxid": 108486,
                "species_taxid": 108486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7329,
                "matched_fragments": 373,
                "total_fragments": 841,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium dentalis",
                "strain": "strain=Marseille-P4122",
                "accession": "GCA_900232865.1",
                "taxid": 2014528,
                "species_taxid": 2014528,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2278,
                "matched_fragments": 261,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium zhongnanshanii",
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                "accession": "GCA_014490575.1",
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                "species_taxid": 2768834,
                "relation_to_type": "type",
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                "ani": 78.7767,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium glyciniphilum",
                "strain": "strain=AJ 3170",
                "accession": "GCA_000626675.1",
                "taxid": 1404244,
                "species_taxid": 1404244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2542,
                "matched_fragments": 166,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium xerosis",
                "strain": "strain=NBRC 16721",
                "accession": "GCA_001552415.1",
                "taxid": 1725,
                "species_taxid": 1725,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.0462,
                "matched_fragments": 219,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium yudongzhengii",
                "strain": "strain=2183",
                "accession": "GCA_003065405.1",
                "taxid": 2080740,
                "species_taxid": 2080740,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_000163435.1",
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                "matched_fragments": 813,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
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                "status": "conclusive"
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000738265.1",
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                "matched_fragments": 665,
                "total_fragments": 841,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}