{
    "type": "genome",
    "identifier": "GCF_900461225.1",
    "organism": "Comamonas testosteroni",
    "title": "Comamonas testosteroni",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "SC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900461225.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA4442462",
        "wgs_master": "UFXL00000000.1",
        "refseq_category": "na",
        "taxid": "285",
        "species_taxid": "285",
        "organism_name": "Comamonas testosteroni",
        "infraspecific_name": "strain=NCTC10698",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/08/08",
        "asm_name": "51108_F01",
        "asm_submitter": "SC",
        "gbrs_paired_asm": "GCA_900461225.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/461/225/GCF_900461225.1_51108_F01",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5523746",
        "genome_size_ungapped": "5523746",
        "gc_percent": "61.500000",
        "replicon_count": "0",
        "scaffold_count": "7",
        "contig_count": "7",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900461225.1-RS_2024_08_16",
        "annotation_date": "2024-08-16",
        "total_gene_count": "5101",
        "protein_coding_gene_count": "4891",
        "non_coding_gene_count": "123",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-08-08",
    "dateModified": "2018-08-08",
    "datePublished": "2018-08-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Comamonas testosteroni"
        ],
        "sample_taxid": [
            "285"
        ],
        "sample_host_organism": [
            "environmental"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.534 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5523746",
        "Number of Sequences": "7",
        "Longest Sequences (bp)": "5470499",
        "N50 (bp)": "5470499",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.4",
        "Number of CDSs": "4962",
        "Average Protein Length": "321.0",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "17",
        "Number of tRNAs": "104",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Comamonas testosteroni",
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                "accession": "GCA_900461225.1",
                "taxid": 285,
                "species_taxid": 285,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1835,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Comamonas testosteroni",
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                "accession": "GCA_000241525.2",
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                "species_taxid": 285,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9833,
                "matched_fragments": 1769,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Comamonas testosteroni",
                "strain": "strain=NBRC 14951",
                "accession": "GCA_000740035.1",
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                "species_taxid": 285,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Comamonas thiooxydans",
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                "accession": "GCA_000964545.1",
                "taxid": 363952,
                "species_taxid": 363952,
                "relation_to_type": "type",
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                "matched_fragments": 1507,
                "total_fragments": 1837,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas thiooxydans",
                "strain": "strain=DSM 17888",
                "accession": "GCA_001517325.1",
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                "species_taxid": 363952,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.362,
                "matched_fragments": 1517,
                "total_fragments": 1837,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas fluminis",
                "strain": "strain=CJ34",
                "accession": "GCA_019186805.1",
                "taxid": 2796366,
                "species_taxid": 2796366,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.7582,
                "matched_fragments": 1146,
                "total_fragments": 1837,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas koreensis",
                "strain": "strain=KCTC 12005",
                "accession": "GCA_021026195.1",
                "taxid": 160825,
                "species_taxid": 160825,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.284,
                "matched_fragments": 698,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax facilis",
                "strain": "strain=DSM 649",
                "accession": "GCA_023913775.1",
                "taxid": 12917,
                "species_taxid": 12917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.703,
                "matched_fragments": 625,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga crocea",
                "strain": "strain=BA0156",
                "accession": "GCA_011388215.1",
                "taxid": 2716225,
                "species_taxid": 2716225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8968,
                "matched_fragments": 492,
                "total_fragments": 1837,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xylophilus ampelinus",
                "strain": "strain=CFBP 1192",
                "accession": "GCA_024832295.1",
                "taxid": 54067,
                "species_taxid": 54067,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.545,
                "matched_fragments": 415,
                "total_fragments": 1837,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000241525.1",
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                "matched_fragments": 1769,
                "total_fragments": 1837,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.74",
                "min_intra_species_ani": "98.70",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000761245.1",
                "gtdb_species": "s__Comamonas testosteroni_C",
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                "matched_fragments": 1550,
                "total_fragments": 1837,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_014076415.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000964545.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas",
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                "num_clustered_genomes": 29,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas",
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                "num_clustered_genomes": 10,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
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        "coding_genes": 5102.667,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
        "Comamonas",
        "testosteroni"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}