{
    "type": "genome",
    "identifier": "GCF_900461315.1",
    "organism": "Lacrimispora sphenoides",
    "title": "Lacrimispora sphenoides",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "SC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900461315.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA44518168",
        "wgs_master": "UFXF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "29370",
        "species_taxid": "29370",
        "organism_name": "Lacrimispora sphenoides",
        "infraspecific_name": "strain=NCTC507",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/08/08",
        "asm_name": "49699_G01",
        "asm_submitter": "SC",
        "gbrs_paired_asm": "GCA_900461315.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/461/315/GCF_900461315.1_49699_G01",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5309474",
        "genome_size_ungapped": "5309474",
        "gc_percent": "44.000000",
        "replicon_count": "0",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900461315.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "4824",
        "protein_coding_gene_count": "4693",
        "non_coding_gene_count": "90",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-08-08",
    "dateModified": "2018-08-08",
    "datePublished": "2018-08-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lacrimispora sphenoides"
        ],
        "sample_taxid": [
            "29370"
        ],
        "sample_host_organism": [
            "not available"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "not available: to be reported later"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.499 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5309474",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "5281361",
        "N50 (bp)": "5281361",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.8",
        "Number of CDSs": "4829",
        "Average Protein Length": "323.0",
        "Coding Ratio (%)": "88.1",
        "Number of rRNAs": "12",
        "Number of tRNAs": "69",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lacrimispora sphenoides",
                "strain": "strain=NCTC507",
                "accession": "GCA_900461315.1",
                "taxid": 29370,
                "species_taxid": 29370,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1769,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lacrimispora sphenoides",
                "strain": "strain=ATCC 19403",
                "accession": "GCA_900105615.1",
                "taxid": 29370,
                "species_taxid": 29370,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.997,
                "matched_fragments": 1760,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lacrimispora celerecrescens",
                "strain": "strain=18A",
                "accession": "GCA_002797975.1",
                "taxid": 29354,
                "species_taxid": 29354,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.8485,
                "matched_fragments": 1510,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacrimispora aerotolerans",
                "strain": "strain=DSM 5434",
                "accession": "GCA_000687555.1",
                "taxid": 36832,
                "species_taxid": 36832,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5028,
                "matched_fragments": 510,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia hansenii",
                "strain": "strain=DSM 20583",
                "accession": "GCA_025147655.1",
                "taxid": 1322,
                "species_taxid": 1322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0828,
                "matched_fragments": 54,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacrimispora algidixylanolytica",
                "strain": "strain=SPL73",
                "accession": "GCA_003609635.1",
                "taxid": 94868,
                "species_taxid": 94868,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7964,
                "matched_fragments": 443,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hungatella hathewayi",
                "strain": "strain=DSM 13479",
                "accession": "GCA_025149285.1",
                "taxid": 154046,
                "species_taxid": 154046,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.7035,
                "matched_fragments": 278,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hungatella hathewayi",
                "strain": "strain=DSM 13479",
                "accession": "GCA_000160095.1",
                "taxid": 154046,
                "species_taxid": 154046,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.2973,
                "matched_fragments": 255,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hungatella effluvii",
                "strain": "strain=DSM 24995",
                "accession": "GCA_003201875.1",
                "taxid": 1096246,
                "species_taxid": 1096246,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1587,
                "matched_fragments": 300,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster asparagiformis",
                "strain": "strain=DSM 15981",
                "accession": "GCA_025149125.1",
                "taxid": 333367,
                "species_taxid": 333367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3021,
                "matched_fragments": 108,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium porci",
                "strain": "strain=WCA-389-WT-23D1",
                "accession": "GCA_009696375.1",
                "taxid": 2605778,
                "species_taxid": 2605778,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8151,
                "matched_fragments": 84,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia producta",
                "strain": "strain=ATCC 27340",
                "accession": "GCA_000373885.1",
                "taxid": 33035,
                "species_taxid": 33035,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.663,
                "matched_fragments": 64,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Murimonas intestini",
                "strain": "strain=DSM 26524",
                "accession": "GCA_024622195.1",
                "taxid": 1337051,
                "species_taxid": 1337051,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3497,
                "matched_fragments": 58,
                "total_fragments": 1769,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900105615.1",
                "gtdb_species": "s__Lacrimispora sphenoides",
                "ani": 99.997,
                "matched_fragments": 1760,
                "total_fragments": 1769,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lacrimispora",
                "ani_circumscription_radius": 96.8556,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.87",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900105215.1",
                "gtdb_species": "s__Lacrimispora sphenoides_A",
                "ani": 96.8381,
                "matched_fragments": 1598,
                "total_fragments": 1769,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lacrimispora",
                "ani_circumscription_radius": 96.8556,
                "mean_intra_species_ani": "97.72",
                "min_intra_species_ani": "97.62",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002365025.1",
                "gtdb_species": "s__Lacrimispora sp002365025",
                "ani": 95.9067,
                "matched_fragments": 1252,
                "total_fragments": 1769,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lacrimispora",
                "ani_circumscription_radius": 95.9912,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002367105.1",
                "gtdb_species": "s__Lacrimispora sp002367105",
                "ani": 93.9877,
                "matched_fragments": 1387,
                "total_fragments": 1769,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lacrimispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002797975.1",
                "gtdb_species": "s__Lacrimispora celerecrescens",
                "ani": 93.8485,
                "matched_fragments": 1510,
                "total_fragments": 1769,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lacrimispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.58",
                "min_intra_species_ani": "99.58",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000732605.1",
                "gtdb_species": "s__Lacrimispora celerecrescens_B",
                "ani": 91.4018,
                "matched_fragments": 1376,
                "total_fragments": 1769,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lacrimispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.56",
                "min_intra_species_ani": "95.54",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Lacrimispora",
        "sphenoides"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}