# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_1	LOCUS_00010	sequence1:456..683(-)	frameshift		694,505,746,953,943,783	WP_013882008.1	aldo/keto reductase	84.0	19.3	61.9
MGA_2	LOCUS_00020	sequence1:769..966(-)	frameshift,internal_stop_codon	1047..1049(-)	746,694,943,1194,953,783	WP_013882008.1	aldo/keto reductase	81.5	16.2	69.8
MGA_4	LOCUS_00040	sequence1:1244..1420(-)	frameshift,internal_stop_codon	1047..1049(-)	1194,1267	WP_013882008.1	aldo/keto reductase	87.9	15.6	66.7
MGA_5	LOCUS_00050	sequence1:1658..1810(+)	frameshift		1905,1798	WP_000744184.1	hypothetical protein	94.0	51.6	72.9
MGA_6	LOCUS_00060	sequence1:2241..2534(-)	frameshift		2272,2620,2239	WP_000115493.1	lipopolysaccharide heptosyltransferase II	92.8	25.8	87.8
MGA_7	LOCUS_00070	sequence1:2618..2821(-)	frameshift		2931,2622	WP_000115493.1	lipopolysaccharide heptosyltransferase II	98.5	18.9	90.9
MGA_8	LOCUS_00080	sequence1:2848..3228(-)	frameshift		2931,2622	WP_000115493.1	lipopolysaccharide heptosyltransferase II	80.2	28.9	89.1
MGA_10	LOCUS_00100	sequence1:4605..5366(+)	frameshift		5460,5318	WP_000860874.1	aspartate-semialdehyde dehydrogenase	94.5	69.1	94.1
MGA_11	LOCUS_00110	sequence1:5338..5490(+)	frameshift		5321,5460	WP_000860874.1	aspartate-semialdehyde dehydrogenase	82.0	11.8	92.7
MGA_12	LOCUS_00120	sequence1:5729..6034(-)	frameshift		5740	WP_000473912.1	hypothetical protein	98.0	78.0	84.8
MGA_16	LOCUS_00160	sequence1:9335..10072(+)	frameshift		9958,9318,10343	WP_209611964.1	Mrp/NBP35 family ATP-binding protein	85.3	52.0	93.8
MGA_17	LOCUS_00170	sequence1:9957..10400(+)	frameshift		9958,10343	WP_209611964.1	Mrp/NBP35 family ATP-binding protein	87.8	32.1	95.3
MGA_18	LOCUS_00180	sequence1:10901..11716(-)	frameshift		10930,10659,10678	WP_011578360.1	glycosyltransferase family 8 protein	98.2	65.9	98.5
MGA_20	LOCUS_00200	sequence1:12370..12765(+)	frameshift,internal_stop_codon	12355..12357(+)	12130,12251,12828,12747	WP_120945058.1	FtsK/SpoIIIE domain-containing protein	95.4	15.8	51.9
MGA_22	LOCUS_00220	sequence1:13380..13571(-)	frameshift		13567	WP_001099471.1	urease accessory protein UreD	93.7	22.6	75.0
MGA_23	LOCUS_00230	sequence1:13562..13888(-)	frameshift		13868,13567	WP_001099471.1	urease accessory protein UreD	92.6	37.7	93.0
MGA_24	LOCUS_00240	sequence1:13830..14183(-)	frameshift		13868,13567	WP_001099471.1	urease accessory protein UreD	99.1	43.8	88.8
MGA_25	LOCUS_00250	sequence1:14183..14314(-)	frameshift		14340	WP_000238762.1	urease accessory protein UreG	100.0	21.6	95.3
MGA_28	LOCUS_00260	sequence2:378..515(+)	frameshift		234,340	WP_000061441.1	FAD-dependent oxidoreductase	100.0	10.0	95.6
MGA_33	LOCUS_00310	sequence2:4225..6024(-)	partial			WP_000644179.1	hypothetical protein	73.1	76.7	64.9
MGA_46	LOCUS_00440	sequence2:16412..16807(-)	frameshift,internal_stop_codon	16820..16822(-)	16354,16429,16925	WP_120945058.1	FtsK/SpoIIIE domain-containing protein	95.4	15.8	51.9
MGA_47	LOCUS_00450	sequence2:16923..17072(-)	frameshift,internal_stop_codon	17244..17246(-),16819..16821(-)	17192,17081,16924	WP_120945058.1	FtsK/SpoIIIE domain-containing protein	95.9	6.0	69.4
MGA_48	LOCUS_00460	sequence2:17461..17589(+)	frameshift		17562	WP_011578360.1	glycosyltransferase family 8 protein	88.1	9.1	97.3
MGA_51	LOCUS_00490	sequence2:19114..19347(-)	frameshift,internal_stop_codon	19114..19116(-)	19372,18996	WP_000852747.1	HNH endonuclease	100.0	15.9	69.6
MGA_53	LOCUS_00510	sequence2:19591..20319(-)	frameshift		20333	WP_000930564.1	RNA-guided endonuclease TnpB family protein	100.0	56.7	90.5
MGA_54	LOCUS_00520	sequence2:20328..20873(-)	frameshift		20336	WP_000930564.1	RNA-guided endonuclease TnpB family protein	99.4	42.2	97.2
MGA_55	LOCUS_00530	sequence2:21560..21766(-)	frameshift		21585,21828,21549	WP_000988444.1	hypothetical protein	89.7	32.3	73.8
MGA_56	LOCUS_00540	sequence2:21939..22094(-)	partial			WP_000258489.1	hypothetical protein	98.0	6.2	60.0
MGA_69	LOCUS_00670	sequence2:38887..39258(+)	frameshift,internal_stop_codon	39256..39258(+)	39361,39521,39351	WP_013882008.1	aldo/keto reductase	100.0	37.0	62.6
MGA_70	LOCUS_00680	sequence2:39339..39536(+)	frameshift,internal_stop_codon	39256..39258(+)	39361,39521,39558,39351	WP_013882008.1	aldo/keto reductase	81.5	16.2	69.8
MGA_71	LOCUS_00690	sequence2:39533..39850(+)	frameshift,internal_stop_codon	39256..39258(+)	39361,39521,39558,39351,39799	WP_013882008.1	aldo/keto reductase	79.0	25.4	63.9
MGA_75	LOCUS_00730	sequence2:43424..44794(-)	frameshift		44826	WP_000037869.1	DNA-directed RNA polymerase subunit beta/beta'	99.8	15.7	94.5
MGA_76	LOCUS_00740	sequence2:44719..45387(-)	frameshift		44828,45389	WP_000037869.1	DNA-directed RNA polymerase subunit beta/beta'	84.2	6.5	95.7
MGA_77	LOCUS_00750	sequence2:45342..46046(-)	frameshift		46092,45389	WP_000037869.1	DNA-directed RNA polymerase subunit beta/beta'	97.9	7.9	92.1
MGA_78	LOCUS_00760	sequence2:46078..46842(-)	frameshift		46841,46094	WP_000037869.1	DNA-directed RNA polymerase subunit beta/beta'	98.4	8.7	98.8
MGA_79	LOCUS_00770	sequence2:46728..47651(-)	frameshift		46840,47764	WP_000037869.1	DNA-directed RNA polymerase subunit beta/beta'	95.4	10.0	87.0
MGA_80	LOCUS_00780	sequence2:47684..48223(-)	frameshift		48273,47763	WP_000037869.1	DNA-directed RNA polymerase subunit beta/beta'	86.6	5.4	96.8
MGA_81	LOCUS_00790	sequence2:48238..48522(-)	frameshift		48794,48515,48268,48653	WP_000037869.1	DNA-directed RNA polymerase subunit beta/beta'	87.2	2.8	97.6
MGA_82	LOCUS_00800	sequence2:48512..48652(-)	frameshift		48514,48892,48793,48267,48652	WP_000037869.1	DNA-directed RNA polymerase subunit beta/beta'	97.8	1.6	82.2
MGA_83	LOCUS_00810	sequence2:48613..48783(-)	frameshift		49056,48513,48792,48651,48891	WP_000037869.1	DNA-directed RNA polymerase subunit beta/beta'	76.8	1.5	97.7
MGA_84	LOCUS_00820	sequence2:49045..49431(-)	frameshift		49505,48788,49574,49544,48890,49052,49454	WP_000037869.1	DNA-directed RNA polymerase subunit beta/beta'	100.0	4.4	94.5
MGA_85	LOCUS_00830	sequence2:49536..49934(-)	frameshift		50114,50210,49988,49572,49542,49930,49452,49503	WP_000037869.1	DNA-directed RNA polymerase subunit beta/beta'	90.9	4.2	96.7
MGA_86	LOCUS_00840	sequence2:50199..50480(-)	frameshift		49985,50466,50502,49927,50730,50610,50111,50207	WP_000037869.1	DNA-directed RNA polymerase subunit beta/beta'	92.5	3.0	97.7
MGA_88	LOCUS_00850	sequence3:95..247(+)	frameshift		235	WP_000744184.1	hypothetical protein	94.0	51.6	72.9
MGA_90	LOCUS_00870	sequence3:991..1260(-)	frameshift		1265,1411,781,1302,1034,941	WP_000115493.1	lipopolysaccharide heptosyltransferase II	91.0	23.2	87.7
MGA_91	LOCUS_00880	sequence3:1801..2709(+)	frameshift		2662,2692,1774	WP_000632518.1	histidine--tRNA ligase	98.7	67.4	91.3
MGA_92	LOCUS_00890	sequence3:2714..3058(+)	frameshift		2661,2694	WP_000632518.1	histidine--tRNA ligase	100.0	25.8	96.5
MGA_93	LOCUS_00900	sequence3:3045..3248(+)	frameshift		3239	WP_000860874.1	aspartate-semialdehyde dehydrogenase	100.0	19.4	89.6
MGA_94	LOCUS_00910	sequence3:3278..4084(+)	frameshift		3239	WP_000860874.1	aspartate-semialdehyde dehydrogenase	100.0	77.5	94.4
MGA_95	LOCUS_00920	sequence3:4155..4475(-)	frameshift		4163	WP_000473912.1	hypothetical protein	97.2	81.1	84.5
MGA_101	LOCUS_00980	sequence3:10026..10154(-)	frameshift		10052	WP_011578360.1	glycosyltransferase family 8 protein	88.1	9.1	97.3
MGA_102	LOCUS_00990	sequence3:10543..10692(+)	frameshift,internal_stop_codon	10369..10371(+),10794..10796(+)	10690,10533,10422	WP_120945058.1	FtsK/SpoIIIE domain-containing protein	95.9	6.0	69.4
MGA_103	LOCUS_01000	sequence3:10808..11203(+)	frameshift,internal_stop_codon	10793..10795(+)	10689,11185,11260	WP_120945058.1	FtsK/SpoIIIE domain-containing protein	95.4	15.8	51.9
MGA_116	LOCUS_01130	sequence3:21591..23390(+)	partial			WP_000644179.1	hypothetical protein	73.1	76.7	64.9
MGA_126	LOCUS_01230	sequence3:34394..34735(+)	frameshift		34705	WP_002851346.1	COG2958 family protein	85.8	31.4	43.7
MGA_127	LOCUS_01240	sequence3:34746..35396(+)	frameshift		34705	WP_002851346.1	COG2958 family protein	98.6	64.5	62.9
MGA_144	LOCUS_01410	sequence3:55046..55807(-)	frameshift,internal_stop_codon	55045..55047(-)	55869	WP_000749307.1	Hop family outer membrane protein HopM/HopN	100.0	36.0	77.1
MGA_145	LOCUS_01420	sequence3:55858..56307(-)	frameshift		55868,56453	WP_000749307.1	Hop family outer membrane protein HopM/HopN	98.0	21.0	61.2
MGA_146	LOCUS_01430	sequence3:56361..57011(-)	frameshift		56453	WP_000749307.1	Hop family outer membrane protein HopM/HopN	91.2	27.9	58.6
MGA_147	LOCUS_01440	sequence3:57424..57786(+)	partial			WP_003435056.1	IS200/IS605 family transposase	76.7	70.5	48.4
MGA_181	LOCUS_01780	sequence3:96419..96865(-)	frameshift		97139,96935	WP_209612245.1	radical SAM/SPASM domain-containing protein	100.0	51.0	79.1
MGA_182	LOCUS_01790	sequence3:96901..97158(-)	frameshift		97139,96935	WP_209612245.1	radical SAM/SPASM domain-containing protein	84.7	24.8	81.9
MGA_196	LOCUS_01930	sequence3:109421..110332(-)	partial			WP_001114818.1	energy transducer TonB	51.2	46.9	94.2
MGA_208	LOCUS_02050	sequence3:122489..123127(+)	frameshift		123115	WP_012804178.1	site-specific DNA-methyltransferase	84.4	26.3	40.8
MGA_209	LOCUS_02060	sequence3:123105..124358(+)	frameshift		123121	WP_211204934.1	site-specific DNA-methyltransferase	84.2	70.0	36.4
MGA_216	LOCUS_02130	sequence3:131646..131789(-)	frameshift		131888,131860,131790	WP_010875501.1	ABC transporter ATP-binding protein	97.9	7.3	89.1
MGA_217	LOCUS_02140	sequence3:131859..132350(-)	frameshift		132487,131790,131888,131860,132596,132444,132414,132447	WP_010875501.1	ABC transporter ATP-binding protein	88.3	24.3	88.9
MGA_226	LOCUS_02230	sequence3:143765..153367(+)	partial			WP_000874574.1	vacuolating cytotoxin domain-containing protein	57.7	68.8	44.1
MGA_227	LOCUS_02240	sequence3:154166..154525(-)	frameshift,internal_stop_codon	154807..154809(-)	154584	WP_000625017.1	ABC transporter ATP-binding protein	100.0	51.1	95.8
MGA_229	LOCUS_02260	sequence3:155459..155713(-)	frameshift		155734,155806	WP_000751514.1	Hop family adhesin HopQ	100.0	13.1	76.2
MGA_230	LOCUS_02270	sequence3:155792..156184(-)	frameshift		156216,155733,155805	WP_000751514.1	Hop family adhesin HopQ	100.0	19.2	67.9
MGA_231	LOCUS_02280	sequence3:156169..156477(-)	frameshift,internal_stop_codon	156601..156603(-)	156216	WP_000751514.1	Hop family adhesin HopQ	85.3	20.6	39.4
MGA_232	LOCUS_02290	sequence3:156601..157146(-)	internal_stop_codon	156601..156603(-)		WP_000751514.1	Hop family adhesin HopQ	99.4	28.1	61.5
MGA_249	LOCUS_02460	sequence3:171555..171914(-)	internal_stop_codon	171915..171917(-)		WP_000889818.1	ABC transporter ATP-binding protein	98.3	22.7	87.2
MGA_250	LOCUS_02470	sequence3:171915..172235(-)	frameshift,internal_stop_codon	171914..171916(-),171915..171917(-)	172412,172268	WP_000889818.1	ABC transporter ATP-binding protein	100.0	20.5	86.8
MGA_251	LOCUS_02480	sequence3:172338..172634(-)	frameshift		172273,172663,172411,172684	WP_000889818.1	ABC transporter ATP-binding protein	81.6	15.5	87.5
MGA_252	LOCUS_02490	sequence3:172577..172921(-)	frameshift		172411,172684,172663	WP_000889818.1	ABC transporter ATP-binding protein	64.9	15.1	79.5
MGA_253	LOCUS_02500	sequence3:172936..173097(-)	frameshift		172960,173122,173302	WP_209612011.1	ABC transporter permease	90.6	14.1	91.7
MGA_254	LOCUS_02510	sequence3:173097..173324(-)	frameshift		173121,173523,173301,172959	WP_209612011.1	ABC transporter permease	85.3	18.8	90.6
MGA_255	LOCUS_02520	sequence3:173288..173476(-)	frameshift,internal_stop_codon	173758..173760(-)	173121,173523,173301	WP_209612011.1	ABC transporter permease	95.2	17.4	81.4
MGA_256	LOCUS_02530	sequence3:173500..173694(-)	frameshift,internal_stop_codon	173758..173760(-)	173523,173301	WP_209612011.1	ABC transporter permease	90.6	17.1	86.2
MGA_258	LOCUS_02550	sequence3:175730..177148(+)	partial			WP_000591296.1	Hop family outer membrane protein HopL	91.1	42.4	31.9
MGA_265	LOCUS_02620	sequence3:183069..183683(-)	partial			WP_001160132.1	hypothetical protein	46.6	72.0	86.3
MGA_267	LOCUS_02640	sequence3:185684..186058(+)	frameshift,internal_stop_codon	185555..185557(+)	185632,185663	WP_000944753.1	HP1165 family MFS efflux transporter	99.2	31.3	87.0
MGA_272	LOCUS_02690	sequence3:188988..189518(+)	frameshift,internal_stop_codon	189739..189741(+)	189512	WP_013087187.1	DUF932 domain-containing protein	97.2	61.5	29.2
MGA_279	LOCUS_02760	sequence3:198647..198919(+)	frameshift		198886	WP_000944753.1	HP1165 family MFS efflux transporter	90.0	21.0	75.3
MGA_306	LOCUS_03030	sequence3:227819..228058(-)	partial			WP_000592437.1	Hop family adhesin AlpA	94.9	14.6	76.0
MGA_316	LOCUS_03130	sequence3:243555..245078(+)	partial			WP_165446556.1	phosphate acetyltransferase	70.2	51.2	51.4
MGA_321	LOCUS_03180	sequence3:248599..249120(-)	frameshift,internal_stop_codon	249197..249199(-),249194..249196(-),249191..249193(-)	249169,249181	WP_010875559.1	helicase DnaB modulator	98.8	82.2	70.2
MGA_322	LOCUS_03190	sequence3:250917..251147(+)	frameshift,internal_stop_codon	251395..251397(+),250875..250877(+),251364..251366(+)	251216,251285,251387,251406,251135	WP_209611819.1	outer membrane beta-barrel protein	97.4	10.6	73.0
MGA_335	LOCUS_03320	sequence3:261328..261546(-)	frameshift,internal_stop_codon	261326..261328(-)	261818,261643,261764	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	100.0	5.6	76.4
MGA_336	LOCUS_03330	sequence3:261633..261767(-)	frameshift,internal_stop_codon	262011..262013(-)	261818,261643,261764	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	93.2	3.2	75.6
MGA_337	LOCUS_03340	sequence3:261792..261995(-)	frameshift,internal_stop_codon	262011..262013(-)	261818,261643,261767	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	94.0	4.9	63.5
MGA_338	LOCUS_03350	sequence3:262011..262253(-)	frameshift,internal_stop_codon	262299..262301(-),262011..262013(-)	262377,261818,261767	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	100.0	6.2	75.0
MGA_339	LOCUS_03360	sequence3:262529..262945(-)	frameshift,internal_stop_codon	262297..262299(-),262541..262543(-),262952..262954(-)	262985,262594,262378,262654	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	75.4	7.9	59.6
MGA_340	LOCUS_03370	sequence3:262962..263492(-)	frameshift,internal_stop_codon	262952..262954(-),263696..263698(-)	262985,263581,263559	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	96.0	13.3	52.6
MGA_341	LOCUS_03380	sequence3:263696..263974(-)	frameshift,internal_stop_codon	264044..264046(-),263696..263698(-)	264170,263581,263559	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	96.7	7.0	61.1
MGA_342	LOCUS_03390	sequence3:264044..264259(-)	frameshift,internal_stop_codon	264410..264412(-),264281..264283(-),264043..264045(-)	264169,264295	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	57.7	3.2	58.5
MGA_343	LOCUS_03400	sequence3:264410..264622(-)	frameshift,internal_stop_codon	264410..264412(-),264912..264914(-),264281..264283(-)	264617,264172,264295	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	95.7	5.0	58.2
MGA_344	LOCUS_03410	sequence3:264597..264887(-)	frameshift,internal_stop_codon	264954..264956(-),264410..264412(-),264912..264914(-)	264617	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	93.8	7.0	70.0
MGA_432	LOCUS_04280	sequence3:362867..363592(-)	partial			WP_011962335.1	DUF262 domain-containing protein	85.9	40.0	25.5
MGA_439	LOCUS_04350	sequence3:370688..371122(+)	internal_stop_codon	371120..371122(+)		WP_209611650.1	DUF262 domain-containing protein	97.9	24.6	88.7
MGA_440	LOCUS_04360	sequence3:371153..372418(+)	frameshift,internal_stop_codon	371120..371122(+)	372412	WP_209611650.1	DUF262 domain-containing protein	99.8	72.8	86.2
MGA_441	LOCUS_04370	sequence3:372745..373083(+)	frameshift		372705,373074,373204,373135	WP_000926158.1	hypothetical protein	75.9	14.0	54.1
MGA_442	LOCUS_04380	sequence3:373214..373657(+)	frameshift,internal_stop_codon	373656..373658(+)	373074,373204,373135	WP_000926158.1	hypothetical protein	99.3	25.5	34.6
MGA_458	LOCUS_04540	sequence3:392806..393147(+)	frameshift		393193,393078	WP_000892392.1	hypothetical protein	73.5	28.8	41.0
MGA_459	LOCUS_04550	sequence3:393208..393549(+)	frameshift		393520,393193,393527	WP_000892392.1	hypothetical protein	91.2	38.0	64.4
MGA_501	LOCUS_04970	sequence3:424913..425092(+)	frameshift		425059,425116	WP_000787447.1	50S ribosome-binding GTPase	94.9	9.8	73.2
MGA_502	LOCUS_04980	sequence3:425160..425810(+)	frameshift		425116,425842,425059,426007,425740	WP_000787447.1	50S ribosome-binding GTPase	90.3	34.0	85.6
MGA_503	LOCUS_04990	sequence3:425996..426442(+)	frameshift		426005,425843,425741,426414	WP_000787447.1	50S ribosome-binding GTPase	93.9	24.3	72.7
MGA_504	LOCUS_05000	sequence3:426402..426608(+)	frameshift		426412	WP_000787447.1	50S ribosome-binding GTPase	92.6	12.0	65.2
MGA_517	LOCUS_05130	sequence3:444466..445107(+)	partial			WP_010951079.1	site-specific DNA-methyltransferase	55.4	21.0	38.2
MGA_519	LOCUS_05150	sequence3:445536..446096(+)	partial			WP_011035470.1	site-specific DNA-methyltransferase	53.8	18.4	44.6
MGA_534	LOCUS_05300	sequence3:461499..462281(-)	frameshift		462324	WP_000387635.1	DUF262 domain-containing protein	99.6	37.6	83.4
MGA_535	LOCUS_05310	sequence3:462310..463557(-)	frameshift		462330	WP_000387635.1	DUF262 domain-containing protein	99.5	60.1	82.8
MGA_536	LOCUS_05320	sequence3:463730..464773(-)	partial			WP_116269310.1	tetratricopeptide repeat protein	71.8	56.8	31.7
MGA_552	LOCUS_05480	sequence3:480795..481082(+)	frameshift,internal_stop_codon	481167..481169(+)	481076	WP_000709741.1	outer inflammatory protein OipA	100.0	29.8	60.8
MGA_553	LOCUS_05490	sequence3:481169..481681(+)	frameshift,internal_stop_codon	481167..481169(+)	481076	WP_000709741.1	outer inflammatory protein OipA	92.9	55.7	69.5
MGA_555	LOCUS_05510	sequence3:482694..483113(+)	frameshift,internal_stop_codon	483082..483084(+)	483080	WP_002287525.1	IS200/IS605 family element RNA-guided endonuclease TnpB	90.6	31.7	27.0
MGA_556	LOCUS_05520	sequence3:483106..483993(+)	partial			WP_001762563.1	RNA-guided endonuclease TnpB family protein	93.9	59.7	31.4
MGA_558	LOCUS_05540	sequence3:485177..485539(-)	partial			WP_003435056.1	IS200/IS605 family transposase	76.7	70.5	48.4
MGA_590	LOCUS_05860	sequence3:518219..519013(+)	frameshift		518989	WP_000798606.1	outer membrane beta-barrel protein HofB	98.5	54.7	87.4
MGA_591	LOCUS_05870	sequence3:519057..519659(+)	frameshift		518998	WP_000798606.1	outer membrane beta-barrel protein HofB	100.0	41.8	91.5
MGA_611	LOCUS_06070	sequence3:537655..538392(-)	partial			WP_000751160.1	Hop family outer membrane protein HopA	89.0	41.6	32.6
MGA_620	LOCUS_06160	sequence3:546057..547106(+)	partial			WP_005466243.1	glycosyltransferase family 25 protein	33.8	43.5	33.1
MGA_636	LOCUS_06320	sequence3:564488..565456(+)	partial			WP_013525092.1	SIR2 family protein	64.6	74.2	28.3
MGA_660	LOCUS_06560	sequence3:591591..592496(+)	frameshift		591544,592689,592490	WP_094324403.1	DUF262 and DUF1524 domain-containing protein	99.3	41.7	51.3
MGA_661	LOCUS_06570	sequence3:592537..592746(+)	frameshift		592689,592882,592836,592487,592952	WP_011203121.1	DUF262 and DUF1524 domain-containing protein	84.1	8.4	51.7
MGA_662	LOCUS_06580	sequence3:592968..593648(+)	frameshift,internal_stop_codon	592840..592842(+)	592689,592851,592885,592955,592940	WP_094324403.1	DUF262 and DUF1524 domain-containing protein	97.3	31.5	50.7
MGA_686	LOCUS_06820	sequence3:618638..619126(-)	frameshift		619152,619106	WP_209435792.1	restriction endonuclease subunit S	87.0	35.0	49.6
MGA_707	LOCUS_07030	sequence3:640743..641144(+)	frameshift		641141,640717	WP_011476619.1	Fic family protein	97.7	52.0	34.6
MGA_712	LOCUS_07080	sequence3:645625..645879(-)	frameshift		646106,646003,645946	WP_209612388.1	outer membrane protein	100.0	13.1	84.5
MGA_713	LOCUS_07090	sequence3:646095..646304(-)	frameshift		646112,646508,645949,646006	WP_209612393.1	outer membrane protein	95.7	10.0	65.2
MGA_714	LOCUS_07100	sequence3:646598..647152(-)	frameshift,internal_stop_codon	647338..647340(-),647290..647292(-),647410..647412(-),647242..647244(-)	646602,646506,647157,647422	WP_209612393.1	outer membrane protein	98.9	26.4	42.4
MGA_732	LOCUS_07280	sequence3:667375..667908(-)	partial			WP_168747012.1	DNA cytosine methyltransferase	65.5	32.0	44.0
MGA_744	LOCUS_07400	sequence3:683088..683237(-)	frameshift,internal_stop_codon	683061..683063(-)	683114,683063	WP_010875465.1	lysozyme	71.4	30.2	85.7
MGA_747	LOCUS_07430	sequence3:684248..684838(-)	partial			WP_000892717.1	Sel1-like repeat protein HcpC	77.6	52.4	48.0
MGA_756	LOCUS_07520	sequence3:690833..691699(-)	frameshift		691752	WP_001201399.1	bifunctional UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase/pseudaminic acid cytidylyltransferase	100.0	56.1	82.1
MGA_757	LOCUS_07530	sequence3:691690..692379(-)	frameshift		691752	WP_001201399.1	bifunctional UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase/pseudaminic acid cytidylyltransferase	90.8	40.2	88.0
MGA_766	LOCUS_07620	sequence3:701053..701283(+)	frameshift,internal_stop_codon	701531..701533(+),701011..701013(+),701500..701502(+)	701523,701542,701271,701352,701421	WP_209611819.1	outer membrane beta-barrel protein	97.4	10.6	73.0
MGA_792	LOCUS_07880	sequence3:722350..722598(-)	internal_stop_codon	722665..722667(-)		WP_209611321.1	acyl carrier protein	84.1	11.1	42.0
MGA_793	LOCUS_07890	sequence3:722665..722970(-)	frameshift,internal_stop_codon	722664..722666(-)	722970,723069	WP_209611321.1	acyl carrier protein	85.1	13.9	66.3
MGA_794	LOCUS_07900	sequence3:723028..723543(-)	frameshift		723072,722970,723511	WP_209611321.1	acyl carrier protein	97.7	27.1	62.7
MGA_795	LOCUS_07910	sequence3:723506..723979(-)	frameshift		723511	WP_209611321.1	acyl carrier protein	98.7	25.0	66.9
MGA_800	LOCUS_07960	sequence3:725324..725626(-)	frameshift		725328,725694	WP_093067210.1	dynamin family protein	91.0	12.2	50.5
MGA_801	LOCUS_07970	sequence3:725813..726244(-)	frameshift,internal_stop_codon	725813..725815(-)	725697,725788	WP_004318448.1	dynamin family protein	76.9	14.8	44.5
MGA_802	LOCUS_07980	sequence3:726309..726446(-)	frameshift,internal_stop_codon	726461..726463(-)	726553,726602	WP_209611323.1	dynamin-like GTPase family protein	97.8	8.3	90.9
MGA_803	LOCUS_07990	sequence3:726722..727279(-)	frameshift,internal_stop_codon	726460..726462(-)	727549,727396,726601,726730,727501,726558	WP_209611323.1	dynamin-like GTPase family protein	96.8	33.3	79.3
MGA_804	LOCUS_08000	sequence3:727877..728038(-)	frameshift		728058	WP_000271456.1	endoribonuclease VapD	96.2	53.7	94.1
MGA_827	LOCUS_08230	sequence3:754124..755053(+)	partial			WP_011458865.1	DNA adenine methylase	73.1	77.9	26.8
MGA_832	LOCUS_08280	sequence3:758240..758704(-)	frameshift		758245	WP_001228436.1	hypothetical protein	76.0	16.1	61.0
MGA_843	LOCUS_08390	sequence3:766636..766776(+)	internal_stop_codon	766624..766626(+)		WP_001115881.1	4-oxalocrotonate tautomerase family protein	100.0	67.6	82.6
MGA_846	LOCUS_08420	sequence3:769476..769802(+)	partial			WP_000775280.1	DUF3519 domain-containing protein	64.8	7.3	47.1
MGA_848	LOCUS_08440	sequence3:770201..770698(+)	partial			WP_000775280.1	DUF3519 domain-containing protein	83.6	14.4	78.3
MGA_860	LOCUS_08560	sequence3:780426..780764(+)	frameshift		780762,780758	WP_001146659.1	type I restriction endonuclease subunit R	99.1	10.6	77.2
MGA_861	LOCUS_08570	sequence3:780794..781075(+)	frameshift		780762,780758,781039	WP_001146659.1	type I restriction endonuclease subunit R	97.8	8.6	78.0
MGA_862	LOCUS_08580	sequence3:781269..783551(+)	frameshift		781045	WP_001146659.1	type I restriction endonuclease subunit R	99.9	72.4	76.3
MGA_865	LOCUS_08610	sequence3:785518..786291(+)	partial			WP_000005927.1	restriction endonuclease subunit S	80.9	57.3	88.0
MGA_886	LOCUS_08820	sequence3:806780..806923(-)	frameshift		806943	WP_000763575.1	flagellar motor switch protein FliM	100.0	13.3	89.4
MGA_899	LOCUS_08950	sequence3:819224..819421(-)	internal_stop_codon	819543..819545(-)		WP_000748046.1	outer membrane beta-barrel protein	100.0	10.9	84.6
MGA_900	LOCUS_08960	sequence3:819384..819533(-)	frameshift,internal_stop_codon	819542..819544(-)	819763	WP_000748046.1	outer membrane beta-barrel protein	71.4	5.9	88.6
MGA_901	LOCUS_08970	sequence3:819543..819749(-)	frameshift,internal_stop_codon	819542..819544(-)	819763,819815	WP_000748046.1	outer membrane beta-barrel protein	98.5	11.3	71.6
MGA_902	LOCUS_08980	sequence3:819807..820190(-)	frameshift,internal_stop_codon	819542..819544(-)	819763,819815	WP_000748046.1	outer membrane beta-barrel protein	97.6	20.7	45.2
MGA_934	LOCUS_09300	sequence3:849299..849610(+)	frameshift		849553	WP_209612115.1	hypothetical protein	96.1	36.4	78.8
MGA_935	LOCUS_09310	sequence3:849603..849893(+)	frameshift,internal_stop_codon	849891..849893(+)	849896,849553,850020	WP_209612115.1	hypothetical protein	100.0	35.3	85.4
MGA_978	LOCUS_09740	sequence3:891344..891553(+)	frameshift		891312	WP_001153384.1	zinc ribbon domain-containing protein YjdM	100.0	63.3	79.7
MGA_985	LOCUS_09810	sequence3:898916..899332(+)	frameshift,internal_stop_codon	899417..899419(+),899378..899380(+),899330..899332(+)	899368,899440	WP_000943660.1	hypothetical protein	100.0	23.6	63.0
MGA_986	LOCUS_09820	sequence3:899466..900290(+)	frameshift,internal_stop_codon	899417..899419(+),899378..899380(+),899330..899332(+)	899368,900289,899440,900518	WP_000943660.1	hypothetical protein	100.0	39.1	81.8
MGA_987	LOCUS_09830	sequence3:900591..900911(+)	frameshift		900522	WP_000943660.1	hypothetical protein	100.0	17.0	60.5
MGA_992	LOCUS_09880	sequence3:906981..907271(+)	frameshift,internal_stop_codon	906954..906956(+),907456..907458(+),906912..906914(+)	907250	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	93.8	7.0	70.0
MGA_993	LOCUS_09890	sequence3:907246..907458(+)	frameshift,internal_stop_codon	906954..906956(+),907456..907458(+),907585..907587(+)	907250,907572,907695	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	95.7	5.0	58.2
MGA_994	LOCUS_09900	sequence3:907609..907824(+)	frameshift,internal_stop_codon	907456..907458(+),907823..907825(+),907585..907587(+)	907698,907572	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	57.7	3.2	58.5
MGA_995	LOCUS_09910	sequence3:907894..908172(+)	frameshift,internal_stop_codon	907822..907824(+),908170..908172(+)	907697,908308,908286	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	96.7	7.0	61.1
MGA_996	LOCUS_09920	sequence3:908376..908906(+)	frameshift,internal_stop_codon	908914..908916(+),908170..908172(+)	908882,908308,908286	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	96.0	13.3	52.6
MGA_997	LOCUS_09930	sequence3:908923..909243(+)	frameshift,internal_stop_codon	909320..909322(+),909241..909243(+),908914..908916(+)	908882,909484,909252	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	89.6	7.2	63.2
MGA_998	LOCUS_09940	sequence3:909582..909854(+)	frameshift,internal_stop_codon	909852..909854(+),909564..909566(+)	910043,910094,909487	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	100.0	7.0	74.4
MGA_999	LOCUS_09950	sequence3:909870..910070(+)	frameshift,internal_stop_codon	909852..909854(+)	910218,910043,910094	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	86.4	4.4	61.4
MGA_1000	LOCUS_09960	sequence3:910095..910229(+)	frameshift,internal_stop_codon	909852..909854(+)	910097,910218,910043	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	93.2	3.2	75.6
MGA_1001	LOCUS_09970	sequence3:910316..910534(+)	frameshift,internal_stop_codon	910534..910536(+)	910097,910218,910043	WP_000405496.1	autotransporter vacuolating cytotoxin VacA	100.0	5.6	76.4
MGA_1002	LOCUS_09980	sequence3:910974..911507(-)	frameshift		911521	WP_012257652.1	FkbM family methyltransferase	100.0	65.1	48.0
MGA_1003	LOCUS_09990	sequence3:911489..911914(-)	frameshift		911521	WP_012257652.1	FkbM family methyltransferase	57.4	30.9	39.8
MGA_1014	LOCUS_10100	sequence3:921959..922327(+)	partial			WP_000487430.1	glycosyltransferase family 10	91.8	23.7	64.3
MGA_1019	LOCUS_10150	sequence3:925278..925664(+)	partial			WP_170128385.1	DUF262 domain-containing protein	94.5	24.2	43.0
MGA_1025	LOCUS_10210	sequence3:931092..931598(-)	frameshift,internal_stop_codon	931680..931682(-)	931640,931616,931120	WP_001171324.1	SPOR domain-containing protein	99.4	68.4	78.4
MGA_1047	LOCUS_10430	sequence3:958100..959212(-)	partial			WP_000775280.1	DUF3519 domain-containing protein	71.4	27.7	62.5
MGA_1066	LOCUS_10620	sequence3:980062..980352(-)	partial			WP_209611435.1	hypothetical protein	95.8	34.5	71.7
MGA_1068	LOCUS_10640	sequence3:980872..982866(-)	partial			WP_000775280.1	DUF3519 domain-containing protein	84.2	58.5	71.7
MGA_1074	LOCUS_10700	sequence3:987173..987421(+)	frameshift,internal_stop_codon	987090..987092(+)	986953,987170	WP_001174648.1	thiol peroxidase	98.8	48.8	84.0
MGA_1099	LOCUS_10950	sequence3:1015040..1016443(+)	frameshift		1016332	WP_000926158.1	hypothetical protein	100.0	79.9	60.5
MGA_1100	LOCUS_10960	sequence3:1016638..1016853(+)	partial			WP_000926158.1	hypothetical protein	73.2	8.8	82.7
MGA_1115	LOCUS_11110	sequence3:1029756..1030025(-)	frameshift		1030036	WP_000890458.1	TIGR00645 family protein	100.0	50.3	91.0
MGA_1116	LOCUS_11120	sequence3:1030031..1030336(-)	partial			WP_209611435.1	hypothetical protein	98.0	37.1	81.8
MGA_1117	LOCUS_11130	sequence3:1030349..1032331(-)	partial			WP_000775280.1	DUF3519 domain-containing protein	99.7	68.7	84.0
MGA_1129	LOCUS_11250	sequence3:1042417..1043379(-)	internal_stop_codon	1042417..1042419(-)		WP_000273909.1	AAA family ATPase	65.9	40.1	38.5
MGA_1130	LOCUS_11260	sequence3:1043469..1045256(-)	partial			WP_010876134.1	DNA cytosine methyltransferase	49.9	70.2	31.3
MGA_1196	LOCUS_11920	sequence3:1107116..1107406(-)	partial			WP_000529779.1	preprotein translocase subunit YajC	89.6	67.7	80.2
MGA_1202	LOCUS_11980	sequence3:1114958..1116214(+)	partial			WP_000760485.1	DNA cytosine methyltransferase	51.4	60.7	29.9
MGA_1212	LOCUS_12080	sequence3:1126769..1127638(-)	partial			WP_000703807.1	energy transducer TonB	47.1	47.7	87.5
MGA_1238	LOCUS_12340	sequence3:1147863..1148456(-)	frameshift		1148724,1148487	WP_000562619.1	microcin C ABC transporter permease YejB	100.0	56.6	90.4
MGA_1239	LOCUS_12350	sequence3:1148459..1148692(-)	frameshift		1148833,1148724,1148487	WP_000562619.1	microcin C ABC transporter permease YejB	90.9	20.1	95.7
MGA_1240	LOCUS_12360	sequence3:1149047..1149319(-)	frameshift,internal_stop_codon	1149390..1149392(-),1149045..1149047(-)	1149521,1149545	WP_000231350.1	extracellular solute-binding protein	100.0	15.2	90.0
MGA_1241	LOCUS_12370	sequence3:1149715..1150176(-)	frameshift,internal_stop_codon	1150188..1150190(-)	1150208,1149521,1149716,1149719,1149545	WP_000231350.1	extracellular solute-binding protein	99.3	25.6	87.5
MGA_1242	LOCUS_12380	sequence3:1150173..1150634(-)	frameshift,internal_stop_codon	1150187..1150189(-)	1150601,1150210,1150580	WP_000231350.1	extracellular solute-binding protein	92.2	23.7	85.1
MGA_1266	LOCUS_12620	sequence3:1173486..1174679(-)	partial			WP_000838751.1	glycosyltransferase family 9 protein	73.0	58.8	36.0
MGA_1271	LOCUS_12670	sequence3:1177302..1178135(-)	partial			WP_010883927.1	DNA methyltransferase	57.4	14.1	37.3
MGA_1272	LOCUS_12680	sequence3:1178195..1180789(-)	frameshift		1178275	WP_010883927.1	DNA methyltransferase	95.8	78.2	34.2
MGA_1285	LOCUS_12810	sequence3:1193124..1193639(-)	frameshift		1193629	WP_004086866.1	site-specific DNA-methyltransferase	94.7	63.8	68.5
MGA_1286	LOCUS_12820	sequence3:1193627..1193905(-)	frameshift		1193629	WP_004086866.1	site-specific DNA-methyltransferase	98.9	35.4	71.4
MGA_1288	LOCUS_12840	sequence3:1195062..1195268(+)	frameshift,internal_stop_codon	1195280..1195282(+),1194869..1194871(+),1194860..1194862(+)	1194985,1195258,1194916,1195423	WP_001074841.1	DEAD/DEAH box helicase family protein	95.6	6.8	60.6
MGA_1289	LOCUS_12850	sequence3:1195429..1195632(+)	frameshift,internal_stop_codon	1195632..1195634(+),1195278..1195280(+)	1195424,1195682,1195256,1195770,1195803	WP_001074841.1	DEAD/DEAH box helicase family protein	94.0	6.5	68.3
MGA_1319	LOCUS_13150	sequence3:1217964..1218224(-)	partial			WP_000991853.1	50S ribosomal protein L18	100.0	72.9	96.5
MGA_1365	LOCUS_13610	sequence3:1255535..1255717(-)	frameshift		1255753,1255883,1255916,1255756	WP_209611766.1	restriction endonuclease subunit S	60.0	9.5	88.9
MGA_1371	LOCUS_13670	sequence3:1261998..1262243(+)	frameshift		1262240,1262259,1262316	WP_001106909.1	DNA cytosine methyltransferase	100.0	22.8	81.5
MGA_1372	LOCUS_13680	sequence3:1262326..1262631(+)	frameshift		1262240,1262816,1262259,1262614,1262825,1262316	WP_001106909.1	DNA cytosine methyltransferase	98.0	27.9	87.9
MGA_1373	LOCUS_13690	sequence3:1262621..1262872(+)	frameshift		1262824,1262613,1262815	WP_001106909.1	DNA cytosine methyltransferase	78.3	18.3	92.3
MGA_1374	LOCUS_13700	sequence3:1262796..1263074(+)	frameshift		1262827,1262622,1262815	WP_001106909.1	DNA cytosine methyltransferase	72.8	18.9	88.1
MGA_1375	LOCUS_13710	sequence3:1263071..1263238(+)	frameshift,internal_stop_codon	1263393..1263395(+),1263236..1263238(+)	1263512,1263322	WP_000614886.1	site-specific DNA-methyltransferase	100.0	23.7	90.9
MGA_1376	LOCUS_13720	sequence3:1263558..1263773(+)	frameshift,internal_stop_codon	1263393..1263395(+),1263516..1263518(+)	1263322	WP_000614886.1	site-specific DNA-methyltransferase	98.6	30.2	84.3
MGA_1392	LOCUS_13880	sequence3:1283256..1283840(-)	frameshift		1283823	WP_209611659.1	phosphoethanolamine transferase	91.8	62.4	53.4
MGA_1420	LOCUS_14160	sequence3:1311191..1311562(+)	frameshift,internal_stop_codon	1311657..1311659(+)	1311523	WP_209611819.1	outer membrane beta-barrel protein	81.3	14.3	62.0
MGA_1422	LOCUS_14180	sequence3:1311947..1312417(+)	frameshift,internal_stop_codon	1312613..1312615(+),1311885..1311887(+)	1312648,1312675,1312405,1311947	WP_000749307.1	Hop family outer membrane protein HopM/HopN	94.9	20.8	39.6
MGA_1424	LOCUS_14200	sequence3:1313144..1313530(-)	partial			WP_000616490.1	ATP/GTP phosphatase	36.7	12.7	57.4
MGA_1447	LOCUS_14430	sequence3:1341891..1343282(-)	partial			WP_000910350.1	site-specific DNA-methyltransferase	85.1	56.6	36.4
MGA_1458	LOCUS_14540	sequence3:1353628..1353900(+)	partial			WP_001155649.1	biotin synthase	77.8	24.8	94.3
MGA_1459	LOCUS_14550	sequence3:1353900..1354454(+)	partial			WP_001208606.1	YihY family inner membrane protein	88.0	55.5	87.0
MGA_1472	LOCUS_14680	sequence3:1364740..1364919(-)	frameshift,internal_stop_codon	1364730..1364732(-),1364466..1364468(-),1364502..1364504(-)	1364745,1364980	WP_209611650.1	DUF262 domain-containing protein	79.7	8.1	51.1
MGA_1475	LOCUS_14710	sequence3:1367541..1367984(+)	frameshift		1368033,1368100,1367958,1368055,1367517,1367423	WP_209612165.1	amino acid permease	94.6	27.7	64.0
MGA_1476	LOCUS_14720	sequence3:1368117..1368770(+)	frameshift		1368032,1368057,1367957,1368105	WP_209612165.1	amino acid permease	93.5	42.3	58.6
MGA_1504	LOCUS_15000	sequence3:1395597..1396151(+)	internal_stop_codon	1396149..1396151(+)		WP_001045361.1	N-6 DNA methylase	82.6	24.9	34.7
MGA_1505	LOCUS_15010	sequence3:1396221..1397636(+)	internal_stop_codon	1396149..1396151(+)		WP_001045361.1	N-6 DNA methylase	97.9	65.4	38.8
MGA_1506	LOCUS_15020	sequence3:1397695..1398228(+)	internal_stop_codon	1398226..1398228(+)		WP_011578509.1	restriction endonuclease subunit S	100.0	42.5	94.4
MGA_1507	LOCUS_15030	sequence3:1398292..1398852(+)	internal_stop_codon	1398226..1398228(+)		WP_011578509.1	restriction endonuclease subunit S	100.0	46.7	98.9
MGA_1521	LOCUS_15170	sequence3:1415159..1415641(-)	frameshift		1415810,1415813	WP_000995184.1	SprT family zinc-dependent metalloprotease	100.0	68.1	85.0
MGA_1524	LOCUS_15200	sequence3:1418008..1418238(-)	frameshift,internal_stop_codon	1418278..1418280(-),1417789..1417791(-),1417758..1417760(-)	1417938,1418019,1417748,1417767,1417869	WP_209611819.1	outer membrane beta-barrel protein	97.4	10.6	73.0
MGA_1565	LOCUS_15610	sequence3:1456036..1457496(+)	frameshift		1457412	WP_014659976.1	hypothetical protein	95.5	51.4	58.8
MGA_1566	LOCUS_15620	sequence3:1457465..1458538(+)	frameshift,internal_stop_codon	1458738..1458740(+)	1457427	WP_014659976.1	hypothetical protein	90.2	35.2	75.2
MGA_1592	LOCUS_15880	sequence3:1483054..1485315(+)	partial			WP_011073439.1	LPS assembly protein LptD	28.3	27.8	26.9
MGA_1610	LOCUS_16060	sequence3:1509248..1509565(-)	frameshift,internal_stop_codon	1509840..1509842(-)	1509298,1509539,1509746,1509736,1509576	WP_013882008.1	aldo/keto reductase	79.0	25.4	63.9
MGA_1611	LOCUS_16070	sequence3:1509562..1509759(-)	frameshift,internal_stop_codon	1509840..1509842(-)	1509736,1509746,1509539,1509576	WP_013882008.1	aldo/keto reductase	81.5	16.2	69.8
MGA_1612	LOCUS_16080	sequence3:1509840..1510211(-)	frameshift,internal_stop_codon	1509840..1509842(-)	1509736,1509746,1509576	WP_013882008.1	aldo/keto reductase	100.0	37.0	62.6
MGA_1616	LOCUS_16120	sequence3:1513575..1514441(+)	frameshift		1513496,1513580,1513445	WP_000860874.1	aspartate-semialdehyde dehydrogenase	99.7	82.9	94.8
