{ "type": "genome", "identifier": "GCF_900461455.1", "organism": "Helicobacter acinonychis", "title": "Helicobacter acinonychis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900461455.1", "bioproject": "PRJNA224116", "biosample": "SAMEA87361168", "wgs_master": "UGIA00000000.1", "refseq_category": "na", "taxid": "212", "species_taxid": "212", "organism_name": "Helicobacter acinonychis", "infraspecific_name": "strain=NCTC12686", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/07/31", "asm_name": "57530_D01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900461455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/461/455/GCF_900461455.1_57530_D01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1580878", "genome_size_ungapped": "1580878", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900461455.1-RS_2024_08_15", "annotation_date": "2024-08-15", "total_gene_count": "1560", "protein_coding_gene_count": "1363", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-07-31", "dateModified": "2018-07-31", "datePublished": "2018-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Helicobacter acinonychis" ], "sample_taxid": [ "212" ], "sample_host_organism": [ "Captive cheetah" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": 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"min_intra_species_ani": "95.20", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.89", "num_clustered_genomes": 759, "status": "-" }, { "accession": "GCF_900120335.1", "gtdb_species": "s__Helicobacter pylori_BU", "ani": 89.5259, "matched_fragments": 456, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.42", "min_intra_species_ani": "95.28", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.91", "num_clustered_genomes": 376, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.523, "cell_length": 0.176, "doubling_h": 0.5, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 7.262, "genome_size": 1557588.4, "gc_content": 36.98, "coding_genes": 1447.0, "rRNA16S_genes": 2.0, "tRNA_genes": 36.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.0, 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