{ "type": "genome", "identifier": "GCF_900461525.1", "organism": "Legionella busanensis", "title": "Legionella busanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900461525.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4412681", "wgs_master": "UGOD00000000.1", "refseq_category": "reference genome", "taxid": "190655", "species_taxid": "190655", "organism_name": "Legionella busanensis", "infraspecific_name": "strain=NCTC13316", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/01", "asm_name": "50618_A02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900461525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/461/525/GCF_900461525.1_50618_A02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3934006", "genome_size_ungapped": "3934006", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900461525.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "3583", "protein_coding_gene_count": "3490", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-01", "dateModified": "2018-08-01", "datePublished": "2018-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella busanensis" ], "sample_taxid": [ "190655" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.106 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3934006", "Number of Sequences": "8", "Longest Sequences (bp)": "3414911", "N50 (bp)": "3414911", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.9", "Number of CDSs": "3563", "Average Protein Length": "311.5", "Coding Ratio (%)": "84.6", "Number of rRNAs": "9", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella busanensis", "strain": "strain=NCTC13316", "accession": "GCA_900461525.1", "taxid": 190655, "species_taxid": 190655, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1305, "total_fragments": 1308, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella gresilensis", "strain": "strain=Greoux 11D13", "accession": "GCA_900639865.1", "taxid": 91823, "species_taxid": 91823, "relation_to_type": "type", "validated": true, "ani": 89.2111, "matched_fragments": 1030, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella beliardensis", "strain": "strain=NCTC13315", "accession": "GCA_900452395.1", "taxid": 91822, "species_taxid": 91822, "relation_to_type": "type", "validated": true, "ani": 79.4582, "matched_fragments": 469, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella hackeliae", "strain": "strain=NCTC11979", "accession": "GCA_900452565.1", "taxid": 449, "species_taxid": 449, "relation_to_type": "type", "validated": true, "ani": 78.1454, "matched_fragments": 105, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella pneumophila subsp. pneumophila", "strain": "strain=PartS-Lpneumophila-RM8376", "accession": "GCA_022870105.1", "taxid": 91891, "species_taxid": 446, "relation_to_type": "type", "validated": true, "ani": 78.1246, "matched_fragments": 70, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella hackeliae", "strain": "strain=ATCC35250", "accession": "GCA_000953655.1", "taxid": 449, "species_taxid": 449, "relation_to_type": "type", "validated": true, "ani": 77.9572, "matched_fragments": 107, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella jordanis", "strain": "strain=NCTC11533", "accession": "GCA_900637635.1", "taxid": 456, "species_taxid": 456, "relation_to_type": "type", "validated": true, "ani": 77.9371, "matched_fragments": 80, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella lytica", "strain": "strain=PCM 2298", "accession": "GCA_023921225.1", "taxid": 96232, "species_taxid": 96232, "relation_to_type": "type", "validated": true, "ani": 77.6452, "matched_fragments": 80, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella bozemanae", "strain": "strain=WIGA", "accession": "GCA_001467045.1", "taxid": 447, "species_taxid": 447, "relation_to_type": "type", "validated": true, "ani": 77.3512, "matched_fragments": 102, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella nautarum", "strain": "strain=ATCC 49506", "accession": "GCA_001467895.1", "taxid": 45070, "species_taxid": 45070, "relation_to_type": "type", "validated": true, "ani": 77.3098, "matched_fragments": 96, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella drozanskii", "strain": "strain=ATCC 700990", "accession": "GCA_001467585.1", "taxid": 96228, "species_taxid": 96228, "relation_to_type": "type", "validated": true, "ani": 77.2788, "matched_fragments": 86, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella fallonii", "strain": "strain=LLAP-10", "accession": "GCA_000953135.1", "taxid": 96230, "species_taxid": 96230, "relation_to_type": "type", "validated": true, "ani": 77.2702, "matched_fragments": 98, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella bozemanae", "strain": "strain=WIGA", "accession": "GCA_900640135.1", "taxid": 447, "species_taxid": 447, "relation_to_type": "type", "validated": true, "ani": 77.1347, "matched_fragments": 101, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella nautarum", "strain": "strain=1224", "accession": "GCA_900639935.1", "taxid": 45070, "species_taxid": 45070, "relation_to_type": "type", "validated": true, "ani": 76.9768, "matched_fragments": 97, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella bozemanae", "strain": "strain=ATCC 33217", "accession": "GCA_001648595.1", "taxid": 447, "species_taxid": 447, "relation_to_type": "type", "validated": true, "ani": 76.9594, "matched_fragments": 101, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella drozanskii", "strain": "strain=LLAP-1", "accession": "GCA_900640075.1", "taxid": 96228, "species_taxid": 96228, "relation_to_type": "type", "validated": true, "ani": 76.8558, "matched_fragments": 84, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella jordanis", "strain": "strain=ATCC 33623", "accession": "GCA_001648675.1", "taxid": 456, "species_taxid": 456, "relation_to_type": "type", "validated": true, "ani": 76.6937, "matched_fragments": 75, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900461525.1", "gtdb_species": "s__Legionella_C busanensis", "ani": 100.0, "matched_fragments": 1306, "total_fragments": 1308, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900639865.1", "gtdb_species": "s__Legionella_C gresilensis", "ani": 89.2009, "matched_fragments": 1031, "total_fragments": 1308, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": 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"N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900452385.1", "gtdb_species": "s__Tatlockia donaldsonii", "ani": 78.0771, "matched_fragments": 93, "total_fragments": 1308, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000953655.1", "gtdb_species": "s__Tatlockia hackeliae", "ani": 77.9778, "matched_fragments": 107, "total_fragments": 1308, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900637635.1", "gtdb_species": "s__Tatlockia jordanis", "ani": 77.9371, "matched_fragments": 80, "total_fragments": 1308, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.59", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_001467745.1", "gtdb_species": "s__Tatlockia jamestowniensis", "ani": 77.4717, "matched_fragments": 101, "total_fragments": 1308, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.71", "min_intra_species_ani": "99.16", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.95", "num_clustered_genomes": 4, "status": "-" }, { "accession": 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"s__Tatlockia fairfieldensis", "ani": 77.1509, "matched_fragments": 76, "total_fragments": 1308, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000162755.2", "gtdb_species": "s__Legionella drancourtii", "ani": 77.0254, "matched_fragments": 80, "total_fragments": 1308, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001648595.1", "gtdb_species": "s__Legionella bozemanae", "ani": 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