{ "type": "genome", "identifier": "GCF_900475025.1", "organism": "Streptococcus ferus", "title": "Streptococcus ferus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900475025.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3572443", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1345", "species_taxid": "1345", "organism_name": "Streptococcus ferus", "infraspecific_name": "strain=NCTC12278", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/17", "asm_name": "41906_G01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900475025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/475/025/GCF_900475025.1_41906_G01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1872314", "genome_size_ungapped": "1872314", "gc_percent": "43.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900475025.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "1912", "protein_coding_gene_count": "1793", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-17", "dateModified": "2018-06-17", "datePublished": "2018-06-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus ferus" ], "sample_taxid": [ "1345" ], "sample_host_organism": [ "Rat" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.531 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1872314", "Number of Sequences": "1", "Longest Sequences (bp)": "1872314", "N50 (bp)": "1872314", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.8", "Number of CDSs": "1827", "Average Protein Length": "305.1", "Coding Ratio (%)": "89.3", "Number of rRNAs": "15", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus ferus", "strain": "strain=NCTC12278", "accession": "GCA_900475025.1", "taxid": 1345, "species_taxid": 1345, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 623, "total_fragments": 624, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus ferus", "strain": "strain=DSM 20646", "accession": "GCA_000372425.1", "taxid": 1345, "species_taxid": 1345, "relation_to_type": "type", "validated": true, "ani": 99.9857, "matched_fragments": 607, "total_fragments": 624, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 81.4252, "matched_fragments": 113, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 80.1845, "matched_fragments": 67, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 80.0722, "matched_fragments": 76, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ratti", "strain": "strain=FA-1", "accession": "GCA_000286075.1", "taxid": 1341, "species_taxid": 1341, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6596, "matched_fragments": 187, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus thermophilus", "strain": "strain=ATCC 19258", "accession": "GCA_010120595.1", "taxid": 1308, "species_taxid": 1308, "relation_to_type": "type", "validated": true, "ani": 79.5795, "matched_fragments": 85, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ratti", "strain": "strain=DSM 20564", "accession": "GCA_000347915.1", "taxid": 1341, "species_taxid": 1341, "relation_to_type": "suspected-type", "validated": true, "ani": 79.5564, "matched_fragments": 172, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 79.4189, "matched_fragments": 71, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus plurextorum", "strain": "strain=DSM 22810", "accession": "GCA_000423745.1", "taxid": 456876, "species_taxid": 456876, "relation_to_type": "type", "validated": true, "ani": 79.2612, "matched_fragments": 86, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sanguinis", "strain": "strain=NCTC7863", "accession": "GCA_900475505.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 78.9961, "matched_fragments": 88, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus catagoni", "strain": "strain=99-1/2017", "accession": "GCA_011421425.1", "taxid": 2654874, "species_taxid": 2654874, "relation_to_type": "type", "validated": true, "ani": 78.8841, "matched_fragments": 68, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pantholopis", "strain": "strain=TA 26", "accession": "GCA_001642085.1", "taxid": 1811193, "species_taxid": 1811193, "relation_to_type": "type", "validated": true, "ani": 78.6372, "matched_fragments": 95, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus thermophilus", "strain": "strain=DSM 20617", "accession": "GCA_019972875.1", "taxid": 1308, "species_taxid": 1308, "relation_to_type": "type", "validated": true, "ani": 78.6256, "matched_fragments": 77, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equi subsp. ruminatorum", "strain": "strain=CECT 5772", "accession": "GCA_000706805.1", "taxid": 254358, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 78.5417, "matched_fragments": 64, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 78.4785, "matched_fragments": 68, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus troglodytae", "strain": "strain=TKU 31", "accession": "GCA_002355215.1", "taxid": 1111760, "species_taxid": 1111760, "relation_to_type": "type", "validated": true, "ani": 78.3048, "matched_fragments": 157, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus devriesei", "strain": "strain=DSM 19639", "accession": "GCA_000423725.1", "taxid": 231233, "species_taxid": 231233, "relation_to_type": "type", "validated": true, "ani": 78.2938, "matched_fragments": 158, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus peroris", "strain": "strain=ATCC 700780", "accession": "GCA_000187585.1", "taxid": 68891, "species_taxid": 68891, "relation_to_type": "type", "validated": true, "ani": 78.2192, "matched_fragments": 63, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sanguinis", "strain": "strain=NCTC 7863", "accession": "GCA_001593525.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 78.005, "matched_fragments": 78, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000372425.1", "gtdb_species": "s__Streptococcus ferus", "ani": 99.9857, "matched_fragments": 607, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_018137985.1", "gtdb_species": "s__Streptococcus sp018137985", "ani": 81.3929, "matched_fragments": 112, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002960625.1", "gtdb_species": "s__Streptococcus suis_T", "ani": 80.0082, "matched_fragments": 88, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000286075.1", "gtdb_species": "s__Streptococcus ratti", "ani": 79.6725, "matched_fragments": 187, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.59", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.87", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_002964575.1", "gtdb_species": "s__Streptococcus suis_R", "ani": 79.5512, "matched_fragments": 79, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001598035.1", "gtdb_species": "s__Streptococcus halotolerans", "ani": 79.3125, "matched_fragments": 82, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002964045.1", "gtdb_species": "s__Streptococcus suis_U", "ani": 79.2376, "matched_fragments": 83, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.50", "min_intra_species_ani": "95.50", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001074155.1", "gtdb_species": "s__Streptococcus pseudopneumoniae_A", "ani": 79.1595, "matched_fragments": 67, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001078705.1", "gtdb_species": "s__Streptococcus sanguinis_D", "ani": 78.8093, "matched_fragments": 79, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013343115.1", "gtdb_species": "s__Streptococcus sanguinis_H", "ani": 78.7869, "matched_fragments": 94, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.75", "min_intra_species_ani": "95.06", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCF_000963275.1", "gtdb_species": "s__Streptococcus parasanguinis_B", "ani": 78.7649, "matched_fragments": 72, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.2991, "mean_intra_species_ani": "95.64", "min_intra_species_ani": "95.37", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.85", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_001650315.1", "gtdb_species": "s__Streptococcus sp001650315", "ani": 78.7569, "matched_fragments": 63, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.60", "min_intra_species_ani": "97.60", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000186445.1", "gtdb_species": "s__Streptococcus agalactiae", "ani": 78.5373, "matched_fragments": 71, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "98.18", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.63", "num_clustered_genomes": 1516, "status": "-" }, { "accession": "GCF_002355215.1", "gtdb_species": "s__Streptococcus troglodytae", "ani": 78.365, "matched_fragments": 158, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000423725.1", "gtdb_species": "s__Streptococcus devriesei", "ani": 78.2938, "matched_fragments": 158, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001642085.1", "gtdb_species": "s__Streptococcus pantholopis", "ani": 78.2917, "matched_fragments": 91, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015594605.1", "gtdb_species": "s__Streptococcus sp015594605", "ani": 78.2764, "matched_fragments": 89, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_901875555.1", "gtdb_species": "s__Streptococcus parasanguinis_H", "ani": 78.2559, "matched_fragments": 75, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002096855.1", "gtdb_species": "s__Streptococcus mitis_Y", "ani": 78.2437, "matched_fragments": 65, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.03", "min_intra_species_ani": "96.03", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000187585.1", "gtdb_species": "s__Streptococcus peroris", "ani": 78.2192, "matched_fragments": 63, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.68", "min_intra_species_ani": "96.68", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001937065.1", "gtdb_species": "s__Streptococcus sp001937065", "ani": 78.177, "matched_fragments": 165, "total_fragments": 624, "gtdb_taxonomy": 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