{ "type": "genome", "identifier": "GCF_900475445.1", "organism": "Streptococcus cristatus ATCC 51100", "title": "Streptococcus cristatus ATCC 51100", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900475445.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3649037", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "889201", "species_taxid": "45634", "organism_name": "Streptococcus cristatus ATCC 51100", "infraspecific_name": "strain=NCTC 12479", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/17", "asm_name": "42727_F01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900475445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/475/445/GCF_900475445.1_42727_F01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2000351", "genome_size_ungapped": "2000351", "gc_percent": "42.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900475445.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "1965", "protein_coding_gene_count": "1853", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-17", "dateModified": "2018-06-17", "datePublished": "2018-06-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus cristatus ATCC 51100" ], "sample_taxid": [ "889201" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.562 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2000351", "Number of Sequences": "1", "Longest Sequences (bp)": "2000351", "N50 (bp)": "2000351", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.6", "Number of CDSs": "1894", "Average Protein Length": "307.5", "Coding Ratio (%)": "87.3", "Number of rRNAs": "12", "Number of tRNAs": "58", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus cristatus", "strain": "strain=NCTC12479", "accession": "GCA_900475445.1", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 665, "total_fragments": 666, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_000222765.2", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 99.9714, "matched_fragments": 657, "total_fragments": 666, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_000187855.1", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 99.9591, "matched_fragments": 654, "total_fragments": 666, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_011612585.1", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 95.1648, "matched_fragments": 599, "total_fragments": 666, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus sinensis", "strain": "strain=HKU4", "accession": "GCA_000767835.1", "taxid": 176090, "species_taxid": 176090, "relation_to_type": "type", "validated": true, "ani": 87.8069, "matched_fragments": 443, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sanguinis", "strain": "strain=NCTC7863", "accession": "GCA_900475505.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 85.2496, "matched_fragments": 420, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 81.7851, "matched_fragments": 217, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pneumoniae", "strain": "strain=CCUG 28588", "accession": "GCA_001679535.1", "taxid": 1313, "species_taxid": 1313, "relation_to_type": "type", "validated": true, "ani": 81.3214, "matched_fragments": 193, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 80.8442, "matched_fragments": 202, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 80.6721, "matched_fragments": 126, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 79.4042, "matched_fragments": 113, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 79.3653, "matched_fragments": 80, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000222765.1", "gtdb_species": "s__Streptococcus cristatus", "ani": 99.9714, "matched_fragments": 657, "total_fragments": 666, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.39", "min_intra_species_ani": "95.04", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 17, "status": "inconclusive" }, { "accession": "GCF_003943815.1", "gtdb_species": "s__Streptococcus cristatus_F", "ani": 95.005, "matched_fragments": 576, "total_fragments": 666, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "inconclusive" }, { "accession": "GCF_003943465.1", "gtdb_species": "s__Streptococcus cristatus_C", "ani": 94.8527, "matched_fragments": 579, "total_fragments": 666, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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"N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008369405.1", "gtdb_species": "s__Streptococcus cristatus_G", "ani": 93.1514, "matched_fragments": 586, "total_fragments": 666, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000385925.1", "gtdb_species": "s__Streptococcus cristatus_B", "ani": 92.8523, "matched_fragments": 573, "total_fragments": 666, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { 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"s__Streptococcus sanguinis_A", "ani": 85.0291, "matched_fragments": 400, "total_fragments": 666, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.155, "cell_length": -0.155, "doubling_h": -0.216, "growth_tmp": 37.0, "optimum_tmp": 36.284, "optimum_ph": 7.0, "genome_size": 2080112.133, "gc_content": 42.225, "coding_genes": 1984.2, "rRNA16S_genes": 4.0, "tRNA_genes": 54.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.285, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.969, "thermophilic_range_tmp": 0.03, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptococcus", "cristatus", "ATCC", "51100" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }