{ "type": "genome", "identifier": "GCF_900475505.1", "organism": "Streptococcus sanguinis", "title": "Streptococcus sanguinis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900475505.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3672886", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1305", "species_taxid": "1305", "organism_name": "Streptococcus sanguinis", "infraspecific_name": "strain=NCTC7863", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/17", "asm_name": "42925_G01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900475505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/475/505/GCF_900475505.1_42925_G01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2296927", "genome_size_ungapped": "2296927", "gc_percent": "43.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900475505.1-RS_2024_12_22", "annotation_date": "2024-12-22", "total_gene_count": "2254", "protein_coding_gene_count": "2140", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-17", "dateModified": "2018-06-17", "datePublished": "2018-06-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus sanguinis" ], "sample_taxid": [ "1305" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "Subacute bacterial endocarditis" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.649 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2296927", "Number of Sequences": "1", "Longest Sequences (bp)": "2296927", "N50 (bp)": "2296927", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.3", "Number of CDSs": "2189", "Average Protein Length": "310.0", "Coding Ratio (%)": "88.6", "Number of rRNAs": "12", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus sanguinis", "strain": "strain=NCTC7863", "accession": "GCA_900475505.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 764, "total_fragments": 765, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus sanguinis", "strain": "strain=SK1", "accession": "GCA_000194945.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9848, "matched_fragments": 755, "total_fragments": 765, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus sanguinis", "strain": "strain=NCTC 7863", "accession": "GCA_001593525.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9218, "matched_fragments": 718, "total_fragments": 765, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus gordonii", "strain": "strain=FDAARGOS 1454", "accession": "GCA_019046945.1", "taxid": 1302, "species_taxid": 1302, "relation_to_type": "suspected-type", "validated": true, "ani": 86.5209, "matched_fragments": 434, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_000222765.2", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 85.4199, "matched_fragments": 411, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_011612585.1", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 85.3057, "matched_fragments": 443, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_000187855.1", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 85.0632, "matched_fragments": 414, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sinensis", "strain": "strain=HKU4", "accession": "GCA_000767835.1", "taxid": 176090, "species_taxid": 176090, "relation_to_type": "type", "validated": true, "ani": 84.8946, "matched_fragments": 395, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus constellatus subsp. constellatus", "strain": "strain=CCUG 24889", "accession": "GCA_023167545.1", "taxid": 184246, "species_taxid": 76860, "relation_to_type": "type", "validated": true, "ani": 80.9442, "matched_fragments": 173, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 80.3102, "matched_fragments": 178, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 80.1645, "matched_fragments": 171, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 79.4292, "matched_fragments": 170, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0039, "matched_fragments": 106, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000194945.1", "gtdb_species": "s__Streptococcus sanguinis", "ani": 99.9848, "matched_fragments": 755, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.02", "min_intra_species_ani": "95.01", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 47, "status": "inconclusive" }, { "accession": "GCF_013343115.1", "gtdb_species": "s__Streptococcus sanguinis_H", "ani": 95.0381, "matched_fragments": 692, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.75", "min_intra_species_ani": "95.06", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 13, "status": "inconclusive" }, { "accession": "GCF_003943735.1", "gtdb_species": "s__Streptococcus sanguinis_E", "ani": 94.8683, "matched_fragments": 685, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.70", "min_intra_species_ani": "95.02", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000212815.1", "gtdb_species": "s__Streptococcus sanguinis_C", "ani": 94.6682, "matched_fragments": 648, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.73", "min_intra_species_ani": "95.65", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003943655.1", "gtdb_species": "s__Streptococcus sanguinis_F", "ani": 94.3969, "matched_fragments": 662, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.55", "min_intra_species_ani": "96.90", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_905372115.1", "gtdb_species": "s__Streptococcus sp905372115", "ani": 94.3118, "matched_fragments": 632, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001078705.1", "gtdb_species": "s__Streptococcus sanguinis_D", "ani": 94.2419, "matched_fragments": 676, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900635155.1", "gtdb_species": "s__Streptococcus sanguinis_G", "ani": 93.9677, "matched_fragments": 679, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000212855.1", "gtdb_species": "s__Streptococcus sanguinis_A", "ani": 93.8767, "matched_fragments": 679, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001578795.1", "gtdb_species": "s__Streptococcus gordonii_A", "ani": 85.8573, "matched_fragments": 419, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003943815.1", "gtdb_species": "s__Streptococcus cristatus_F", "ani": 85.4688, "matched_fragments": 417, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000767835.1", "gtdb_species": "s__Streptococcus sinensis", "ani": 84.8946, "matched_fragments": 395, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.90", "min_intra_species_ani": "95.29", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.157, "cell_length": -0.167, "doubling_h": -0.216, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 6.89, "genome_size": 2387871.471, "gc_content": 43.165, "coding_genes": 2245.4, "rRNA16S_genes": 4.0, "tRNA_genes": 60.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.285, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptococcus", "sanguinis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }