# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_63	LOCUS_00620	sequence1:71446..71712(+)	frameshift		71697,71739	WP_011921639.1	sigma-70 family RNA polymerase sigma factor	79.5	46.8	71.2
MGA_94	LOCUS_00920	sequence1:94778..95053(-)	partial			WP_001007697.1	site-specific integrase	85.7	20.7	87.2
MGA_108	LOCUS_01060	sequence1:112817..113209(-)	frameshift		113148	WP_011837700.1	LD-carboxypeptidase	83.8	34.4	67.0
MGA_109	LOCUS_01070	sequence1:113143..113760(-)	frameshift		113148	WP_011837700.1	LD-carboxypeptidase	100.0	64.7	74.6
MGA_116	LOCUS_01140	sequence1:117080..117490(+)	partial			WP_000265622.1	competence type IV pilus minor pilin ComGG	94.1	72.3	32.8
MGA_153	LOCUS_01510	sequence1:156437..161440(+)	partial			WP_011254514.1	DUF1542 domain-containing protein	60.7	39.1	25.9
MGA_171	LOCUS_01690	sequence1:183544..184347(+)	frameshift		183478	WP_011836440.1	serine hydrolase domain-containing protein	97.4	83.6	66.5
MGA_187	LOCUS_01850	sequence1:204910..205089(+)	frameshift		205071	WP_012775225.1	heavy metal translocating P-type ATPase	94.9	6.8	58.9
MGA_188	LOCUS_01860	sequence1:205229..205981(+)	frameshift,internal_stop_codon	206036..206038(+)	205083,205077,205798,205071	WP_012775225.1	heavy metal translocating P-type ATPase	74.0	22.4	67.7
MGA_189	LOCUS_01870	sequence1:206038..207000(+)	frameshift,internal_stop_codon	206036..206038(+)	205798	WP_012775225.1	heavy metal translocating P-type ATPase	81.2	31.4	90.4
MGA_194	LOCUS_01920	sequence1:212715..213875(+)	partial			WP_164925485.1	LysM domain-containing protein	43.8	52.0	94.7
MGA_196	LOCUS_01940	sequence1:215995..216153(-)	partial			WP_011921815.1	PTS system trehalose-specific EIIBC component	100.0	7.8	98.1
MGA_197	LOCUS_01950	sequence1:216203..216553(+)	frameshift		216508	WP_074390220.1	IS630 family transposase	91.4	37.6	96.2
MGA_209	LOCUS_02070	sequence1:230471..231835(+)	frameshift		231778	WP_012774934.1	DUF1430 domain-containing protein	96.7	66.4	99.5
MGA_210	LOCUS_02080	sequence1:231919..232374(+)	frameshift		231775	WP_012774934.1	DUF1430 domain-containing protein	100.0	22.8	96.0
MGA_234	LOCUS_02320	sequence1:257743..258462(+)	internal_stop_codon	258460..258462(+)		WP_012775427.1	LPXTG cell wall anchor domain-containing protein	100.0	31.5	35.3
MGA_235	LOCUS_02330	sequence1:258592..259782(+)	internal_stop_codon	258460..258462(+)		WP_012775427.1	LPXTG cell wall anchor domain-containing protein	85.4	40.7	29.3
MGA_294	LOCUS_02910	sequence1:332426..333271(+)	frameshift		333259	WP_002901047.1	Cof-type HAD-IIB family hydrolase	99.3	59.7	50.2
MGA_295	LOCUS_02920	sequence1:333327..333791(+)	frameshift		333259	WP_002901047.1	Cof-type HAD-IIB family hydrolase	97.4	32.1	67.3
MGA_317	LOCUS_03140	sequence1:353971..354255(+)	partial			WP_000571271.1	GNAT family N-acetyltransferase	93.6	58.4	47.8
MGA_318	LOCUS_03150	sequence1:354408..354761(+)	internal_stop_codon	354339..354341(+)		WP_000844694.1	cysteine hydrolase family protein	92.3	65.1	41.7
MGA_356	LOCUS_03530	sequence1:400908..401222(+)	partial			WP_004194153.1	DNA-directed RNA polymerase subunit omega	62.5	62.5	100.0
MGA_400	LOCUS_03960	sequence1:454287..454682(+)	partial			WP_012774995.1	signal peptidase I	100.0	66.8	100.0
MGA_402	LOCUS_03980	sequence1:454879..459690(+)	partial			WP_015942796.1	InlB B-repeat-containing protein	13.0	15.0	26.0
MGA_405	LOCUS_04010	sequence1:462333..462668(-)	partial			WP_116878224.1	IS982 family transposase	86.5	27.7	59.4
MGA_428	LOCUS_04240	sequence1:484907..485284(-)	partial			WP_224783972.1	IS5 family transposase	85.6	40.0	47.7
MGA_504	LOCUS_05000	sequence1:571507..572013(+)	partial			WP_164736349.1	IS5 family transposase	83.3	39.4	40.4
MGA_506	LOCUS_05020	sequence1:572630..572980(+)	frameshift		572935	WP_074390220.1	IS630 family transposase	91.4	37.6	97.2
MGA_510	LOCUS_05060	sequence1:574244..575200(+)	frameshift		575129,575172,575086	WP_068990772.1	IS66-like element short variant transposase	89.6	64.2	82.4
MGA_511	LOCUS_05070	sequence1:575184..575576(+)	frameshift		575129,575172,575086	WP_068990772.1	IS66-like element short variant transposase	100.0	28.9	80.0
MGA_512	LOCUS_05080	sequence1:575990..576601(+)	partial			WP_001155321.1	IS30-like element ISSpn8 family transposase	100.0	64.0	90.1
MGA_513	LOCUS_05090	sequence1:576961..577230(-)	frameshift		577250	WP_012775527.1	tyrosine-type recombinase/integrase	86.5	26.1	66.2
MGA_527	LOCUS_05230	sequence1:590016..590366(+)	frameshift		590321	WP_074390220.1	IS630 family transposase	91.4	37.6	98.1
MGA_589	LOCUS_05850	sequence1:655719..656102(+)	partial			WP_012775635.1	DUF975 family protein	100.0	45.7	99.2
MGA_593	LOCUS_05890	sequence1:659022..659417(+)	frameshift		659405	WP_032555499.1	site-specific DNA-methyltransferase	94.7	18.2	50.0
MGA_594	LOCUS_05900	sequence1:659839..660681(+)	partial			WP_197693007.1	site-specific DNA-methyltransferase	100.0	42.6	43.3
MGA_596	LOCUS_05920	sequence1:664178..664393(+)	frameshift,internal_stop_codon	664392..664394(+)	664052,664445	WP_029172398.1	IS200/IS605-like element ISSsu4 family transposase	100.0	46.1	100.0
MGA_605	LOCUS_06010	sequence1:675888..676853(+)	frameshift		676652	WP_003688773.1	class I SAM-dependent DNA methyltransferase	77.9	44.7	46.6
MGA_606	LOCUS_06020	sequence1:676807..677529(+)	frameshift		676652	WP_003688773.1	class I SAM-dependent DNA methyltransferase	99.2	44.5	71.4
MGA_612	LOCUS_06080	sequence1:681973..682284(+)	internal_stop_codon	682282..682284(+)		WP_011836983.1	DNA alkylation repair protein	100.0	47.7	60.2
MGA_613	LOCUS_06090	sequence1:682360..682626(+)	internal_stop_codon	682282..682284(+)		WP_002263399.1	DNA alkylation repair protein	100.0	38.6	71.6
MGA_633	LOCUS_06290	sequence1:705010..705402(+)	internal_stop_codon	704893..704895(+)		WP_010714116.1	hypothetical protein	90.0	60.0	36.4
MGA_658	LOCUS_06540	sequence1:730955..731119(+)	partial			WP_012775058.1	hypothetical protein	53.7	53.7	100.0
MGA_659	LOCUS_06550	sequence1:731483..735253(+)	partial			WP_000514298.1	YSIRK-type signal peptide-containing protein	37.1	27.6	29.1
MGA_665	LOCUS_06610	sequence1:746335..746559(+)	frameshift		746547	WP_000599739.1	Fic family protein	95.9	35.3	62.0
MGA_666	LOCUS_06620	sequence1:746534..746941(+)	frameshift		746547	WP_002263264.1	Fic family protein	95.6	64.7	55.4
MGA_707	LOCUS_07030	sequence1:787573..787854(-)	partial			WP_011921673.1	IS110 family transposase	82.8	19.9	97.4
MGA_712	LOCUS_07080	sequence1:796260..797150(+)	frameshift		797129	WP_000285045.1	MATE family efflux transporter	98.0	65.0	59.0
MGA_713	LOCUS_07090	sequence1:797195..797608(+)	frameshift		797129	WP_000285045.1	MATE family efflux transporter	92.0	28.3	57.1
MGA_751	LOCUS_07470	sequence1:829974..830636(-)	internal_stop_codon	830670..830672(-)		WP_012775624.1	lipoprotein	100.0	83.5	95.9
MGA_760	LOCUS_07560	sequence1:840057..840494(+)	partial			WP_003246258.1	tunicamycin resistance ATP-binding TmrB	100.0	73.6	40.0
MGA_762	LOCUS_07580	sequence1:841409..842110(+)	frameshift		841365	WP_002359995.1	Abi family protein	93.1	68.0	42.7
MGA_824	LOCUS_08200	sequence1:909731..909967(+)	partial			WP_171988357.1	hypothetical protein	98.7	71.3	84.4
MGA_832	LOCUS_08280	sequence1:917860..918633(-)	frameshift		918700	WP_012775547.1	tagatose-6-phosphate kinase	100.0	82.9	63.8
MGA_833	LOCUS_08290	sequence1:918641..918793(-)	frameshift		918697	WP_002468897.1	tagatose-6-phosphate kinase	78.0	12.6	66.7
MGA_839	LOCUS_08350	sequence1:922141..922932(+)	internal_stop_codon	922930..922932(+)		WP_011254116.1	site-specific integrase	100.0	76.3	50.9
MGA_840	LOCUS_08360	sequence1:922978..923187(+)	internal_stop_codon	922930..922932(+)		WP_011254116.1	site-specific integrase	97.1	19.1	76.1
MGA_894	LOCUS_08900	sequence1:971742..971894(-)	partial			WP_002289298.1	DUF438 domain-containing protein	100.0	11.0	78.0
MGA_897	LOCUS_08930	sequence1:973221..973376(-)	partial			WP_002365476.1	GNAT family N-acetyltransferase	100.0	30.4	52.9
MGA_898	LOCUS_08940	sequence1:973484..973834(+)	frameshift		973789	WP_074390220.1	IS630 family transposase	91.4	37.6	97.2
MGA_899	LOCUS_08950	sequence1:974332..974613(-)	partial			WP_002365476.1	GNAT family N-acetyltransferase	96.8	53.0	53.3
MGA_980	LOCUS_09760	sequence1:1058571..1059221(-)	internal_stop_codon	1059267..1059269(-)		WP_061630291.1	LPXTG-anchored hyaluronate lyase	97.2	15.9	30.2
MGA_981	LOCUS_09770	sequence1:1059267..1062089(-)	internal_stop_codon	1059267..1059269(-)		WP_061630291.1	LPXTG-anchored hyaluronate lyase	88.5	77.5	41.1
MGA_1051	LOCUS_10470	sequence1:1130502..1131740(+)	partial			WP_014636419.1	alkaline phosphatase family protein	100.0	48.5	100.0
MGA_1052	LOCUS_10480	sequence1:1131800..1132186(-)	frameshift,internal_stop_codon	1132306..1132308(-)	1132293	WP_120171861.1	GBS Bsp-like repeat-containing protein	100.0	11.8	82.8
MGA_1053	LOCUS_10490	sequence1:1132306..1135377(-)	frameshift		1132314	WP_120171861.1	GBS Bsp-like repeat-containing protein	69.1	66.5	60.8
MGA_1066	LOCUS_10620	sequence1:1145840..1146382(-)	partial			WP_012027255.1	DUF3114 domain-containing protein	100.0	60.4	99.4
MGA_1106	LOCUS_11020	sequence1:1189476..1189931(-)	partial			WP_012775213.1	TIGR02206 family membrane protein	100.0	65.1	100.0
MGA_1123	LOCUS_11190	sequence1:1206890..1207138(-)	frameshift		1206940	WP_012027310.1	hypothetical protein	84.1	55.6	92.8
MGA_1156	LOCUS_11520	sequence1:1249318..1249860(-)	frameshift		1249320	WP_012027345.1	HAD family hydrolase	100.0	76.3	100.0
MGA_1173	LOCUS_11680	sequence1:1268571..1268873(-)	partial			WP_000057440.1	IS200/IS605 family transposase	95.0	61.7	80.0
MGA_1174	LOCUS_11690	sequence1:1269131..1269517(+)	internal_stop_codon	1269515..1269517(+)		WP_010921895.1	ISAs1-like element IS1548 family transposase	100.0	34.2	71.3
MGA_1175	LOCUS_11700	sequence1:1269533..1269913(+)	internal_stop_codon	1269515..1269517(+),1269911..1269913(+)		WP_000564846.1	ISAs1-like element IS1548 family transposase	99.2	33.2	67.2
MGA_1176	LOCUS_11710	sequence1:1269914..1270120(+)	internal_stop_codon	1269911..1269913(+)		WP_010922786.1	ISAs1-like element IS1548 family transposase	100.0	18.0	77.9
MGA_1182	LOCUS_11770	sequence1:1275703..1275954(-)	partial			WP_000048054.1	30S ribosomal protein S21	51.8	74.1	100.0
MGA_1217	LOCUS_12120	sequence1:1313743..1314093(+)	frameshift		1314048	WP_074390220.1	IS630 family transposase	91.4	37.6	98.1
MGA_1293	LOCUS_12880	sequence1:1388265..1388858(-)	partial			WP_003723551.1	YitT family protein	90.4	63.1	38.2
MGA_1322	LOCUS_13170	sequence1:1413804..1414217(-)	partial			WP_004194811.1	DUF948 domain-containing protein	67.9	67.9	100.0
MGA_1327	LOCUS_13220	sequence1:1417350..1417700(+)	frameshift		1417655	WP_074390220.1	IS630 family transposase	91.4	37.6	97.2
MGA_1330	LOCUS_13250	sequence1:1419551..1420549(-)	partial			WP_000429384.1	Tex family protein	94.6	43.8	78.1
MGA_1350	LOCUS_13450	sequence1:1436275..1436955(+)	internal_stop_codon	1436953..1436955(+)		WP_000915911.1	Gfo/Idh/MocA family oxidoreductase	100.0	69.5	58.4
MGA_1355	LOCUS_13500	sequence1:1440808..1441023(-)	frameshift,internal_stop_codon	1440807..1440809(-)	1440755,1441148	WP_029172398.1	IS200/IS605-like element ISSsu4 family transposase	100.0	46.1	100.0
MGA_1382	LOCUS_13770	sequence1:1469333..1469620(-)	frameshift		1469392	WP_012027584.1	YSIRK-type signal peptide-containing protein	77.9	10.2	86.5
MGA_1436	LOCUS_14310	sequence1:1521058..1521582(-)	frameshift		1521608	WP_000140846.1	NADPH-dependent oxidoreductase	100.0	73.4	63.8
MGA_1492	LOCUS_14870	sequence1:1580700..1581092(-)	partial			WP_001168903.1	CPBP family intramembrane metalloprotease SdpA	81.5	50.2	34.9
MGA_1555	LOCUS_15500	sequence1:1648331..1649059(+)	frameshift		1649047	WP_164925488.1	IS110 family transposase	100.0	56.3	95.5
MGA_1556	LOCUS_15510	sequence1:1649043..1649522(+)	frameshift		1649056	WP_164925488.1	IS110 family transposase	98.7	36.5	98.1
MGA_1619	LOCUS_16140	sequence1:1719786..1720604(-)	frameshift		1719827	WP_000580599.1	MupG family TIM beta-alpha barrel fold protein	84.6	67.5	37.7
MGA_1677	LOCUS_16720	sequence1:1787386..1787826(-)	frameshift		1787840	WP_012775359.1	3'-5' exoribonuclease YhaM family protein	100.0	46.6	99.3
MGA_1678	LOCUS_16730	sequence1:1787748..1788335(-)	frameshift		1787831	WP_012775359.1	3'-5' exoribonuclease YhaM family protein	86.2	53.7	100.0
MGA_1767	LOCUS_17620	sequence1:1881301..1881819(-)	frameshift		1881327	WP_002262114.1	response regulator transcription factor	94.8	65.6	53.0
MGA_1777	LOCUS_17720	sequence1:1892112..1892264(-)	internal_stop_codon	1892280..1892282(-)		WP_000822370.1	pilin N-terminal domain-containing protein	86.0	6.1	67.4
MGA_1779	LOCUS_17740	sequence1:1894108..1898202(-)	partial			WP_164691239.1	SpaA isopeptide-forming pilin-related protein	76.8	27.9	24.2
MGA_1851	LOCUS_18460	sequence1:1978537..1980390(+)	partial			WP_012028056.1	YfhO family protein	100.0	71.8	100.0
