{ "type": "genome", "identifier": "GCF_900475595.1", "organism": "Streptococcus uberis", "title": "Streptococcus uberis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900475595.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3871780", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1349", "species_taxid": "1349", "organism_name": "Streptococcus uberis", "infraspecific_name": "strain=NCTC3858", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/17", "asm_name": "44343_G01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900475595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/475/595/GCF_900475595.1_44343_G01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1975601", "genome_size_ungapped": "1975601", "gc_percent": "36.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900475595.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "1993", "protein_coding_gene_count": "1879", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-17", "dateModified": "2018-06-17", "datePublished": "2018-06-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus uberis" ], "sample_taxid": [ "1349" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [ "Austria: Vienna" ], "sample_host_location_id": [], "data_size": "0.553 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1975601", "Number of Sequences": "1", "Longest Sequences (bp)": "1975601", "N50 (bp)": "1975601", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.6", "Number of CDSs": "1908", "Average Protein Length": "305.4", "Coding Ratio (%)": "88.5", "Number of rRNAs": "18", "Number of tRNAs": "69", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus uberis", "strain": "strain=NCTC3858", "accession": "GCA_900475595.1", "taxid": 1349, "species_taxid": 1349, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 656, "total_fragments": 658, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus bovimastitidis", "strain": "strain=NZ1587", "accession": "GCA_001885095.1", "taxid": 1856638, "species_taxid": 1856638, "relation_to_type": "type", "validated": true, "ani": 81.0582, "matched_fragments": 324, "total_fragments": 658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus penaeicida", "strain": "strain=CAIM 1838", "accession": "GCA_002887775.1", "taxid": 1765960, "species_taxid": 1765960, "relation_to_type": "type", "validated": true, "ani": 80.6789, "matched_fragments": 312, "total_fragments": 658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus porcinus", "strain": "strain=NCTC10999", "accession": "GCA_900475415.1", "taxid": 1340, "species_taxid": 1340, "relation_to_type": "type", "validated": true, "ani": 80.4551, "matched_fragments": 255, "total_fragments": 658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus dysgalactiae", "strain": "strain=FDAARGOS_1157", "accession": "GCA_016724885.1", "taxid": 1334, "species_taxid": 1334, "relation_to_type": "type", "validated": true, "ani": 80.3239, "matched_fragments": 186, "total_fragments": 658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 80.1872, "matched_fragments": 62, "total_fragments": 658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus dysgalactiae subsp. dysgalactiae", "strain": "strain=NCTC13731", "accession": "GCA_900459225.1", "taxid": 99822, "species_taxid": 1334, "relation_to_type": "type", "validated": true, "ani": 80.1101, "matched_fragments": 185, "total_fragments": 658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pseudoporcinus", "strain": "strain=LQ 940-04", "accession": "GCA_000188035.3", "taxid": 361101, "species_taxid": 361101, "relation_to_type": "type", "validated": true, "ani": 79.9796, "matched_fragments": 231, "total_fragments": 658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parauberis", "strain": "strain=NCFD 2020", "accession": "GCA_000187935.2", "taxid": 1348, "species_taxid": 1348, "relation_to_type": "type", "validated": true, "ani": 79.6963, "matched_fragments": 281, "total_fragments": 658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gallolyticus", "strain": "strain=NCTC13773", "accession": "GCA_900475715.1", "taxid": 315405, "species_taxid": 315405, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6283, "matched_fragments": 133, "total_fragments": 658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gallolyticus subsp. gallolyticus", "strain": "strain=DSM 16831", "accession": "GCA_002000985.1", "taxid": 53354, "species_taxid": 315405, "relation_to_type": "type", "validated": true, "ani": 79.6206, "matched_fragments": 131, "total_fragments": 658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus catagoni", "strain": "strain=99-1/2017", "accession": "GCA_011421425.1", "taxid": 2654874, "species_taxid": 2654874, "relation_to_type": "type", "validated": true, "ani": 79.3364, "matched_fragments": 197, "total_fragments": 658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus constellatus subsp. constellatus", "strain": "strain=CCUG 24889", "accession": "GCA_023167545.1", "taxid": 184246, "species_taxid": 76860, "relation_to_type": "type", "validated": true, "ani": 79.2015, "matched_fragments": 88, "total_fragments": 658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus didelphis", "strain": "strain=DSM 15616", "accession": "GCA_000380005.1", "taxid": 102886, "species_taxid": 102886, "relation_to_type": "type", "validated": true, "ani": 78.8968, "matched_fragments": 218, "total_fragments": 658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus henryi", "strain": "strain=DSM 19005", "accession": "GCA_000376985.1", "taxid": 439219, "species_taxid": 439219, "relation_to_type": "type", "validated": true, "ani": 78.7839, "matched_fragments": 130, "total_fragments": 658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vestibularis", "strain": "strain=ATCC 49124", "accession": "GCA_000188295.1", "taxid": 1343, "species_taxid": 1343, "relation_to_type": "type", "validated": true, "ani": 78.6562, "matched_fragments": 87, "total_fragments": 658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus thoraltensis", "strain": "strain=DSM 12221", "accession": "GCA_000380145.1", "taxid": 55085, "species_taxid": 55085, 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