{ "type": "genome", "identifier": "GCF_900475625.1", "organism": "Levilactobacillus brevis", "title": "Levilactobacillus brevis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900475625.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3919799", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1580", "species_taxid": "1580", "organism_name": "Levilactobacillus brevis", "infraspecific_name": "strain=NCTC13768", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/17", "asm_name": "45709_F01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900475625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/475/625/GCF_900475625.1_45709_F01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2494328", "genome_size_ungapped": "2494328", "gc_percent": "46.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900475625.1-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "2468", "protein_coding_gene_count": "2368", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-17", "dateModified": "2018-06-17", "datePublished": "2018-06-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Levilactobacillus brevis" ], "sample_taxid": [ "1580" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.712 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2494328", "Number of Sequences": "1", "Longest Sequences (bp)": "2494328", "N50 (bp)": "2494328", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.0", "Number of CDSs": "2416", "Average Protein Length": "296.4", "Coding Ratio (%)": "86.1", "Number of rRNAs": "15", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Levilactobacillus brevis", "strain": "strain=NCTC13768", "accession": "GCA_900475625.1", "taxid": 1580, "species_taxid": 1580, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 831, "total_fragments": 831, "ani_threshold": 95, 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wangkuiensis", "strain": "strain=6-5(1)", "accession": "GCA_016861605.1", "taxid": 2799566, "species_taxid": 2799566, "relation_to_type": "type", "validated": true, "ani": 80.3514, "matched_fragments": 327, "total_fragments": 831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Levilactobacillus suantsaiihabitans", "strain": "strain=BCRC 81129", "accession": "GCA_004745505.1", "taxid": 2487722, "species_taxid": 2487722, "relation_to_type": "type", "validated": true, "ani": 80.3441, "matched_fragments": 309, "total_fragments": 831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Levilactobacillus mulengensis", "strain": "strain=112-3", "accession": "GCA_003946045.1", "taxid": 2486025, "species_taxid": 2486025, "relation_to_type": "type", "validated": true, "ani": 80.3346, "matched_fragments": 322, "total_fragments": 831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Levilactobacillus enshiensis", "strain": "strain=HBUAS57009", "accession": "GCA_007115095.1", "taxid": 2590213, "species_taxid": 2590213, "relation_to_type": "type", "validated": true, "ani": 80.2627, "matched_fragments": 313, "total_fragments": 831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Levilactobacillus koreensis", "strain": "strain=JCM 16448", "accession": "GCA_001435525.1", "taxid": 637971, "species_taxid": 637971, "relation_to_type": "type", "validated": true, "ani": 80.1795, "matched_fragments": 296, "total_fragments": 831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Levilactobacillus angrenensis", "strain": "strain=M1530-1", "accession": "GCA_003946085.1", "taxid": 2486020, "species_taxid": 2486020, "relation_to_type": "type", "validated": true, "ani": 80.1625, "matched_fragments": 322, "total_fragments": 831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Levilactobacillus andaensis", "strain": "strain=866-3", "accession": 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