{ "type": "genome", "identifier": "GCF_900475815.1", "organism": "Neisseria elongata subsp. glycolytica", "title": "Neisseria elongata subsp. glycolytica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900475815.1", "bioproject": "PRJNA224116", "biosample": "SAMEA53328418", "wgs_master": "na", "refseq_category": "na", "taxid": "88719", "species_taxid": "495", "organism_name": "Neisseria elongata subsp. glycolytica", "infraspecific_name": "strain=NCTC11050", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/17", "asm_name": "46758_G01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900475815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/475/815/GCF_900475815.1_46758_G01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2249415", "genome_size_ungapped": "2249415", "gc_percent": "54.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-13", "total_gene_count": "2309", "protein_coding_gene_count": "2145", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-17", "dateModified": "2018-06-17", "datePublished": "2018-06-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria elongata subsp. glycolytica" ], "sample_taxid": [ "88719" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [ "Norway: Oslo" ], "sample_host_location_id": [], "data_size": "0.625 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 92.72, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2249415", "Number of Sequences": "1", "Longest Sequences (bp)": "2249415", "N50 (bp)": "2249415", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.3", "Number of CDSs": "2197", "Average Protein Length": "289.6", "Coding Ratio (%)": "84.9", "Number of rRNAs": "12", "Number of tRNAs": "62", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neisseria elongata subsp. glycolytica", "strain": "strain=NCTC11050", "accession": "GCA_900475815.1", "taxid": 88719, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 747, "total_fragments": 749, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria elongata subsp. glycolytica", "strain": "strain=ATCC 29315", "accession": "GCA_000818035.1", "taxid": 88719, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 99.9942, "matched_fragments": 744, "total_fragments": 749, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria elongata", "strain": "strain=NCTC10660", "accession": "GCA_900453895.1", "taxid": 495, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 96.2783, "matched_fragments": 680, "total_fragments": 749, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria elongata subsp. elongata", "strain": "strain=ATCC 25295", "accession": "GCA_900113545.1", "taxid": 214482, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 96.1708, "matched_fragments": 676, 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"below_threshold" }, { "organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_022749515.1", "taxid": 1056807, "species_taxid": 1056807, "relation_to_type": "type", "validated": true, "ani": 84.3317, "matched_fragments": 394, "total_fragments": 749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria cinerea", "strain": "strain=CCUG 2156", "accession": "GCA_021025975.1", "taxid": 483, "species_taxid": 483, "relation_to_type": "type", "validated": true, "ani": 83.4904, "matched_fragments": 301, "total_fragments": 749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria meningitidis", "strain": "strain=PartJ-Nmeningitidis-RM8376", "accession": "GCA_022869645.1", "taxid": 487, "species_taxid": 487, "relation_to_type": "type", "validated": true, "ani": 82.8121, "matched_fragments": 349, "total_fragments": 749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria bacilliformis", "strain": "strain=ATCC BAA-1200", "accession": "GCA_000194925.1", "taxid": 267212, "species_taxid": 267212, "relation_to_type": "type", "validated": true, "ani": 81.8507, "matched_fragments": 460, "total_fragments": 749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria perflava", "strain": "strain=CCUG 17915", "accession": "GCA_023472875.1", "taxid": 33053, "species_taxid": 33053, "relation_to_type": "suspected-type", "validated": true, "ani": 81.7294, "matched_fragments": 327, "total_fragments": 749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria canis", "strain": "strain=ATCC 14687", "accession": "GCA_002108495.1", "taxid": 493, "species_taxid": 493, "relation_to_type": "type", "validated": true, "ani": 78.9666, "matched_fragments": 253, "total_fragments": 749, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Uruburuella suis", "strain": "strain=DSM 17474", "accession": "GCA_004341385.1", "taxid": 252130, "species_taxid": 252130, "relation_to_type": "type", "validated": true, "ani": 78.3087, "matched_fragments": 328, "total_fragments": 749, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 92.72, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900113545.1", "gtdb_species": "s__Neisseria elongata", "ani": 96.1708, "matched_fragments": 676, "total_fragments": 749, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.68", "min_intra_species_ani": "96.06", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 20, "status": "conclusive" }, { "accession": "GCA_001067655.1", "gtdb_species": "s__Neisseria lactamica_B", "ani": 84.911, "matched_fragments": 335, "total_fragments": 749, "gtdb_taxonomy": 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"gc_content": 54.014, "coding_genes": 2165.5, "rRNA16S_genes": 4.0, "tRNA_genes": 60.6, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Neisseria", "elongata", "subsp.", "glycolytica" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }