{ "type": "genome", "identifier": "GCF_900475835.1", "organism": "Jonesia denitrificans", "title": "Jonesia denitrificans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900475835.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3905375", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "43674", "species_taxid": "43674", "organism_name": "Jonesia denitrificans", "infraspecific_name": "strain=NCTC10816", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/17", "asm_name": "45232_G01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900475835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/475/835/GCF_900475835.1_45232_G01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2749647", "genome_size_ungapped": "2749647", "gc_percent": "58.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900475835.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2582", "protein_coding_gene_count": "2488", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-17", "dateModified": "2018-06-17", "datePublished": "2018-06-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Jonesia denitrificans" ], "sample_taxid": [ "43674" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.777 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2749647", "Number of Sequences": "1", "Longest Sequences (bp)": "2749647", "N50 (bp)": "2749647", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.4", "Number of CDSs": "2583", "Average Protein Length": "319.7", "Coding Ratio (%)": "90.1", "Number of rRNAs": "16", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Jonesia denitrificans", "strain": "strain=NCTC10816", "accession": "GCA_900475835.1", "taxid": 43674, "species_taxid": 43674, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 914, "total_fragments": 916, "ani_threshold": 95, 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