{ "type": "genome", "identifier": "GCF_900475855.1", "organism": "Providencia heimbachae", "title": "Providencia heimbachae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900475855.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3936798", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "333962", "species_taxid": "333962", "organism_name": "Providencia heimbachae", "infraspecific_name": "strain=NCTC12003", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/17", "asm_name": "46338_B02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900475855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/475/855/GCF_900475855.1_46338_B02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4286000", "genome_size_ungapped": "4286000", "gc_percent": "40.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900475855.1-RS_2024_12_02", "annotation_date": "2024-12-02", "total_gene_count": "3904", "protein_coding_gene_count": "3761", "non_coding_gene_count": "103", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-17", "dateModified": "2018-06-17", "datePublished": "2018-06-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Providencia heimbachae" ], "sample_taxid": [ "333962" ], "sample_host_organism": [ "Penguin" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.214 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4286000", "Number of Sequences": "1", "Longest Sequences (bp)": "4286000", "N50 (bp)": "4286000", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.4", "Number of CDSs": "3833", "Average Protein Length": "315.7", "Coding Ratio (%)": "84.7", "Number of rRNAs": "22", "Number of tRNAs": "77", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Providencia heimbachae", "strain": "strain=NCTC12003", "accession": "GCA_900475855.1", "taxid": 333962, "species_taxid": 333962, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1427, "total_fragments": 1428, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Providencia heimbachae", "strain": "strain=ATCC 35613", "accession": "GCA_001655055.1", "taxid": 333962, "species_taxid": 333962, "relation_to_type": "type", "validated": true, "ani": 99.9356, "matched_fragments": 1373, "total_fragments": 1428, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Providencia vermicola", "strain": "strain=DSM 17385", "accession": "GCA_020381325.1", "taxid": 333965, "species_taxid": 333965, "relation_to_type": "suspected-type", "validated": true, "ani": 81.3922, "matched_fragments": 806, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Providencia rettgeri", "strain": "strain=FDAARGOS 1450", "accession": "GCA_019048105.1", "taxid": 587, "species_taxid": 587, "relation_to_type": "suspected-type", "validated": true, "ani": 81.3537, "matched_fragments": 863, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Providencia huaxiensis", "strain": "strain=WCHPr000369", "accession": "GCA_002843235.3", "taxid": 2027290, "species_taxid": 2027290, "relation_to_type": "type", "validated": true, "ani": 81.3062, "matched_fragments": 884, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Providencia rustigianii", "strain": "strain=NCTC11802", "accession": "GCA_900455075.1", "taxid": 158850, "species_taxid": 158850, "relation_to_type": "type", "validated": true, "ani": 80.88, "matched_fragments": 753, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Providencia rustigianii", "strain": "strain=DSM 4541", "accession": "GCA_000156395.1", "taxid": 158850, "species_taxid": 158850, "relation_to_type": "type", "validated": true, "ani": 80.6973, "matched_fragments": 749, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Providencia alcalifaciens", "strain": "strain=DSM 30120", "accession": "GCA_000173415.1", "taxid": 126385, "species_taxid": 126385, "relation_to_type": "type", "validated": true, "ani": 80.6733, "matched_fragments": 685, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Providencia manganoxydans", "strain": "strain=LLDRA6", "accession": "GCA_016618195.1", "taxid": 2923283, "species_taxid": 2923283, "relation_to_type": "type", "validated": true, "ani": 80.3066, "matched_fragments": 680, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Providencia burhodogranariea", "strain": "strain=DSM 19968", "accession": "GCA_000314855.2", "taxid": 516074, "species_taxid": 516074, "relation_to_type": "type", "validated": true, "ani": 80.3063, "matched_fragments": 660, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 21557", "accession": "GCA_024347475.1", "taxid": 212667, "species_taxid": 212667, "relation_to_type": "type", "validated": true, "ani": 80.2342, "matched_fragments": 52, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Providencia sneebia", "strain": "strain=DSM 19967", "accession": "GCA_000314895.2", "taxid": 516075, "species_taxid": 516075, "relation_to_type": "type", "validated": true, "ani": 79.9125, "matched_fragments": 540, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliivibrio fischeri", "strain": "strain=DSM 507", "accession": "GCA_023983475.1", "taxid": 668, "species_taxid": 668, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7942, "matched_fragments": 63, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenophonus apicola", "strain": "strain=ArsBeeUS", "accession": "GCA_020268605.1", "taxid": 2879119, "species_taxid": 2879119, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Providencia", "heimbachae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }