{
    "type": "genome",
    "identifier": "GCF_900476035.1",
    "organism": "Aggregatibacter segnis ATCC 33393",
    "title": "Aggregatibacter segnis ATCC 33393",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "SC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900476035.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA87357418",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "888057",
        "species_taxid": "739",
        "organism_name": "Aggregatibacter segnis ATCC 33393",
        "infraspecific_name": "strain=NCTC 10977",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/06/17",
        "asm_name": "53694_C01",
        "asm_submitter": "SC",
        "gbrs_paired_asm": "GCA_900476035.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/476/035/GCF_900476035.1_53694_C01",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2022832",
        "genome_size_ungapped": "2022832",
        "gc_percent": "42.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900476035.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "1961",
        "protein_coding_gene_count": "1853",
        "non_coding_gene_count": "81",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-06-17",
    "dateModified": "2018-06-17",
    "datePublished": "2018-06-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aggregatibacter segnis ATCC 33393"
        ],
        "sample_taxid": [
            "888057"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "not available: to be reported later"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Denmark: Aarhus"
        ],
        "sample_host_location_id": [],
        "data_size": "0.570 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2022832",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2022832",
        "N50 (bp)": "2022832",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.6",
        "Number of CDSs": "1891",
        "Average Protein Length": "316.0",
        "Coding Ratio (%)": "88.6",
        "Number of rRNAs": "19",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Aggregatibacter segnis",
                "strain": "strain=NCTC10977",
                "accession": "GCA_900476035.1",
                "taxid": 739,
                "species_taxid": 739,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 671,
                "total_fragments": 674,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aggregatibacter segnis",
                "strain": "strain=FDAARGOS_987",
                "accession": "GCA_016127115.1",
                "taxid": 739,
                "species_taxid": 739,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9975,
                "matched_fragments": 671,
                "total_fragments": 674,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aggregatibacter segnis",
                "strain": "strain=ATCC 33393",
                "accession": "GCA_000185305.1",
                "taxid": 739,
                "species_taxid": 739,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9821,
                "matched_fragments": 662,
                "total_fragments": 674,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aggregatibacter kilianii",
                "strain": "strain=PN_528",
                "accession": "GCA_003130255.1",
                "taxid": 2025884,
                "species_taxid": 2025884,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8422,
                "matched_fragments": 524,
                "total_fragments": 674,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aggregatibacter aphrophilus",
                "strain": "strain=NCTC5906",
                "accession": "GCA_900636915.1",
                "taxid": 732,
                "species_taxid": 732,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9465,
                "matched_fragments": 497,
                "total_fragments": 674,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aggregatibacter aphrophilus",
                "strain": "strain=ATCC 33389",
                "accession": "GCA_000226495.3",
                "taxid": 732,
                "species_taxid": 732,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8772,
                "matched_fragments": 486,
                "total_fragments": 674,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aggregatibacter actinomycetemcomitans",
                "strain": "strain=NCTC_9710",
                "accession": "GCA_008085305.1",
                "taxid": 714,
                "species_taxid": 714,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6445,
                "matched_fragments": 431,
                "total_fragments": 674,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aggregatibacter actinomycetemcomitans",
                "strain": "strain=DSM 8324",
                "accession": "GCA_000372365.1",
                "taxid": 714,
                "species_taxid": 714,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.636,
                "matched_fragments": 439,
                "total_fragments": 674,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rodentibacter haemolyticus",
                "strain": "strain=DSM 111151",
                "accession": "GCA_015356115.1",
                "taxid": 2778911,
                "species_taxid": 2778911,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8667,
                "matched_fragments": 220,
                "total_fragments": 674,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000185305.1",
                "gtdb_species": "s__Aggregatibacter segnis",
                "ani": 99.9821,
                "matched_fragments": 662,
                "total_fragments": 674,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.84",
                "min_intra_species_ani": "95.38",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003130075.1",
                "gtdb_species": "s__Aggregatibacter segnis_A",
                "ani": 94.9051,
                "matched_fragments": 590,
                "total_fragments": 674,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.43",
                "min_intra_species_ani": "95.32",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_017798005.1",
                "gtdb_species": "s__Aggregatibacter sp000466335",
                "ani": 90.3063,
                "matched_fragments": 485,
                "total_fragments": 674,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.63",
                "min_intra_species_ani": "95.17",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_003130255.1",
                "gtdb_species": "s__Aggregatibacter kilianii",
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                "matched_fragments": 525,
                "total_fragments": 674,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "97.13",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCF_900636915.1",
                "gtdb_species": "s__Aggregatibacter aphrophilus",
                "ani": 85.9619,
                "matched_fragments": 499,
                "total_fragments": 674,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.58",
                "min_intra_species_ani": "96.00",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCF_003129965.1",
                "gtdb_species": "s__Aggregatibacter kilianii_A",
                "ani": 82.542,
                "matched_fragments": 488,
                "total_fragments": 674,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000372365.1",
                "gtdb_species": "s__Aggregatibacter actinomycetemcomitans",
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                "matched_fragments": 439,
                "total_fragments": 674,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.51",
                "min_intra_species_ani": "97.12",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 80,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": -0.222,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 1981651.333,
        "gc_content": 42.6,
        "coding_genes": 1850.0,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 57.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Aggregatibacter",
        "segnis",
        "ATCC",
        "33393"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}