# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_1	LOCUS_00010	sequence1:1..1032(+)	partial			WP_003701412.1	chromosomal replication initiator protein DnaA	93.3	69.6	48.8
MGA_15	LOCUS_00130	sequence1:18085..20259(+)	partial			WP_011837563.1	Cna B-type domain-containing protein	95.3	45.2	27.7
MGA_16	LOCUS_00140	sequence1:20362..21351(+)	internal_stop_codon	20257..20259(+)		WP_011068088.1	FctA domain-containing protein	86.0	12.2	35.2
MGA_57	LOCUS_00550	sequence1:69715..70407(+)	partial			WP_001042503.1	N-acetylmuramoyl-L-alanine amidase family protein	87.4	55.9	46.3
MGA_70	LOCUS_00680	sequence1:84723..85682(+)	partial			WP_002379597.1	CdaR family protein	88.1	72.4	27.5
MGA_92	LOCUS_00900	sequence1:109618..111381(+)	partial			WP_001042503.1	N-acetylmuramoyl-L-alanine amidase family protein	37.5	58.4	45.0
MGA_93	LOCUS_00910	sequence1:111535..112215(+)	partial			WP_011836393.1	GBS Bsp-like repeat-containing protein	73.9	17.4	44.0
MGA_95	LOCUS_00930	sequence1:113560..115080(+)	partial			WP_001042503.1	N-acetylmuramoyl-L-alanine amidase family protein	43.9	53.2	39.6
MGA_103	LOCUS_01010	sequence1:121403..122809(+)	partial			WP_002385251.1	trypsin-like peptidase domain-containing protein	72.4	76.6	50.6
MGA_128	LOCUS_01250	sequence1:148263..150386(+)	partial			WP_011836871.1	SHIRT domain-containing protein	77.1	68.2	48.9
MGA_129	LOCUS_01260	sequence1:150823..153948(+)	partial			WP_011836871.1	SHIRT domain-containing protein	52.3	68.2	47.1
MGA_131	LOCUS_01280	sequence1:154601..154978(-)	partial			WP_010905492.1	TetR/AcrR family transcriptional regulator	92.0	59.8	38.3
MGA_137	LOCUS_01340	sequence1:157495..157650(-)	partial			WP_185623697.1	sigma-70 family RNA polymerase sigma factor	76.5	28.5	61.5
MGA_138	LOCUS_01350	sequence1:157839..158177(-)	partial			WP_002262079.1	MarR family winged helix-turn-helix transcriptional regulator	99.1	73.0	46.8
MGA_140	LOCUS_01370	sequence1:158843..159226(-)	partial			WP_002680024.1	recombinase family protein	95.3	19.0	43.1
MGA_148	LOCUS_01450	sequence1:166760..167218(-)	partial			WP_011392073.1	DNA repair protein RadC	78.3	51.5	45.4
MGA_153	LOCUS_01500	sequence1:171147..173636(+)	partial			WP_012544913.1	AAA family ATPase	78.5	65.3	20.2
MGA_158	LOCUS_01550	sequence1:178108..178389(-)	partial			WP_000598444.1	YutD family protein	91.4	68.5	41.4
MGA_186	LOCUS_01810	sequence1:213806..216298(+)	partial			WP_180947112.1	hypothetical protein	32.0	31.0	21.4
MGA_188	LOCUS_01830	sequence1:217766..220045(-)	partial			WP_011674291.1	transglycosylase domain-containing protein	87.7	73.6	35.9
MGA_203	LOCUS_01980	sequence1:233232..233813(+)	partial			WP_003405093.1	TVP38/TMEM64 family protein	91.2	71.5	41.5
MGA_221	LOCUS_02160	sequence1:249770..249943(+)	partial			WP_000048060.1	30S ribosomal protein S21	75.4	74.1	95.3
MGA_242	LOCUS_02370	sequence1:267506..268057(-)	partial			WP_000798967.1	DUF1450 domain-containing protein	50.8	82.3	48.4
MGA_249	LOCUS_02440	sequence1:274373..278044(+)	partial			WP_010922617.1	heme-binding protein Shr	16.9	16.2	25.5
MGA_261	LOCUS_02560	sequence1:289007..289570(+)	partial			WP_000182211.1	nucleotide exchange factor GrpE	78.6	70.7	55.8
MGA_271	LOCUS_02660	sequence1:299358..305756(+)	partial			WP_011836784.1	CshA/CshB family fibrillar adhesin-related protein	75.0	49.5	32.7
MGA_305	LOCUS_03000	sequence1:336587..338986(-)	partial			WP_000824615.1	amidase family protein	59.9	69.0	41.3
MGA_308	LOCUS_03030	sequence1:343390..346353(+)	partial			WP_001035315.1	pneumococcal surface protein A	19.6	29.7	26.8
MGA_315	LOCUS_03100	sequence1:354591..355175(+)	internal_stop_codon	355173..355175(+)		WP_011023683.1	arsenite methyltransferase	79.9	61.8	42.6
MGA_358	LOCUS_03530	sequence1:396347..396715(+)	partial			WP_011391677.1	single-stranded DNA-binding protein	84.4	66.9	40.8
MGA_360	LOCUS_03550	sequence1:399289..399669(+)	frameshift		399630	WP_011016121.1	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	93.7	42.3	34.7
MGA_363	LOCUS_03580	sequence1:401395..402543(+)	partial			WP_012048303.1	pyruvate kinase	73.8	48.4	41.4
MGA_381	LOCUS_03760	sequence1:416679..416957(+)	frameshift		416942	WP_003548076.1	GyrI-like domain-containing protein	95.7	42.3	63.6
MGA_382	LOCUS_03770	sequence1:416930..417313(+)	frameshift		416942	WP_003548076.1	GyrI-like domain-containing protein	92.9	56.7	54.2
MGA_395	LOCUS_03900	sequence1:433650..433949(+)	internal_stop_codon	433947..433949(+)		WP_002262242.1	zinc-binding alcohol dehydrogenase family protein	100.0	30.9	72.7
MGA_396	LOCUS_03910	sequence1:433956..434606(+)	internal_stop_codon	433947..433949(+)		WP_002904591.1	zinc-binding alcohol dehydrogenase family protein	100.0	67.5	50.5
MGA_400	LOCUS_03950	sequence1:437333..437476(+)	internal_stop_codon	437474..437476(+)		WP_012775663.1	nuclear transport factor 2 family protein	100.0	18.6	83.0
MGA_401	LOCUS_03960	sequence1:437519..438094(+)	internal_stop_codon	437474..437476(+)		WP_012775663.1	nuclear transport factor 2 family protein	100.0	75.5	73.3
MGA_412	LOCUS_04070	sequence1:449428..450345(+)	frameshift		449350	WP_000493179.1	ABC transporter permease	99.7	80.1	29.8
MGA_449	LOCUS_04440	sequence1:487579..487995(+)	partial			WP_010989686.1	hypothetical protein	86.2	67.8	45.0
MGA_454	LOCUS_04490	sequence1:492894..493280(+)	partial			WP_005896184.1	DKNYY domain-containing protein	96.1	28.5	36.4
MGA_466	LOCUS_04610	sequence1:500800..503844(-)	partial			WP_207215633.1	MucBP domain-containing protein	57.6	52.9	32.0
MGA_489	LOCUS_04840	sequence1:522861..524057(+)	partial			WP_011181568.1	NEAT domain-containing leucine-rich repeat protein	69.8	36.1	27.2
MGA_563	LOCUS_05580	sequence1:607216..608937(+)	frameshift		608889	WP_000154218.1	transcription-repair coupling factor	94.8	47.1	29.7
MGA_564	LOCUS_05590	sequence1:608880..610772(+)	frameshift		608889	WP_002484485.1	transcription-repair coupling factor	92.4	47.4	54.8
MGA_566	LOCUS_05610	sequence1:611436..611957(+)	partial			WP_000287207.1	GrpB family protein	74.0	75.6	30.5
MGA_603	LOCUS_05970	sequence1:636689..637387(+)	frameshift		637372	WP_010714181.1	VapE family protein	90.9	25.6	39.2
MGA_604	LOCUS_05980	sequence1:637447..639090(+)	frameshift		637372	WP_010714181.1	VapE family protein	100.0	67.9	45.1
MGA_610	LOCUS_06040	sequence1:641780..642238(+)	partial			WP_010956900.1	HNH endonuclease signature motif containing protein	88.8	68.7	40.6
MGA_622	LOCUS_06160	sequence1:647993..649696(+)	partial			WP_010922076.1	phage minor capsid protein	63.5	72.4	42.8
MGA_637	LOCUS_06310	sequence1:660614..661324(+)	partial			WP_010922225.1	hyaluronoglucosaminidase	38.6	25.5	51.5
MGA_639	LOCUS_06330	sequence1:661666..663267(+)	partial			WP_010922449.1	gp58-like family protein	30.4	27.3	24.5
MGA_645	LOCUS_06390	sequence1:665138..665983(+)	partial			WP_000405235.1	N-acetylmuramoyl-L-alanine amidase LytA	50.9	45.0	39.3
MGA_649	LOCUS_06430	sequence1:668162..668521(+)	partial			WP_010887084.1	iron-sulfur cluster assembly accessory protein	77.3	66.9	32.3
MGA_660	LOCUS_06540	sequence1:679022..680851(+)	partial			WP_011836924.1	ZmpA/ZmpB/ZmpC family metallo-endopeptidase	67.2	25.0	34.5
MGA_682	LOCUS_06760	sequence1:700877..701482(-)	partial			WP_002379958.1	helix-turn-helix transcriptional regulator	34.8	58.3	42.9
MGA_713	LOCUS_07060	sequence1:732368..732910(-)	partial			WP_003245469.1	endonuclease YncB	72.2	61.1	52.3
MGA_728	LOCUS_07210	sequence1:754219..755106(+)	partial			WP_002681336.1	2-dehydropantoate 2-reductase N-terminal domain-containing protein	97.6	54.2	59.4
MGA_729	LOCUS_07220	sequence1:755192..756577(+)	partial			WP_010989484.1	AbiH family protein	38.6	59.0	33.7
MGA_731	LOCUS_07240	sequence1:758257..758454(+)	partial			WP_004133089.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	92.3	60.0	63.3
MGA_732	LOCUS_07250	sequence1:758706..760295(+)	partial			WP_011861367.1	DEAD/DEAH box helicase family protein	99.2	17.5	77.0
MGA_733	LOCUS_07260	sequence1:760349..760588(+)	internal_stop_codon	760586..760588(+)		WP_011861368.1	single-strand DNA-binding protein	100.0	36.1	62.0
MGA_734	LOCUS_07270	sequence1:760601..761008(+)	internal_stop_codon	760586..760588(+)		WP_004802604.1	DNA-binding protein	82.2	50.7	81.1
MGA_738	LOCUS_07310	sequence1:763376..765298(+)	partial			WP_001291423.1	ATP-binding protein	36.4	34.7	26.1
MGA_746	LOCUS_07390	sequence1:771882..772262(+)	partial			WP_185623697.1	sigma-70 family RNA polymerase sigma factor	42.1	38.7	75.5
MGA_786	LOCUS_07790	sequence1:822680..823102(+)	partial			WP_001831194.1	thioesterase family protein	77.1	69.7	23.9
MGA_812	LOCUS_08050	sequence1:846384..847022(-)	partial			WP_000413738.1	transcriptional repressor LexA	64.6	68.0	43.3
MGA_839	LOCUS_08320	sequence1:869421..869630(+)	partial			WP_001831262.1	ferredoxin	85.5	72.0	52.5
MGA_854	LOCUS_08470	sequence1:887124..887648(+)	partial			WP_011987071.1	VanZ family protein	51.7	53.8	40.0
MGA_873	LOCUS_08660	sequence1:908764..910632(-)	partial			WP_002288763.1	helicase C-terminal domain-containing protein	29.1	19.9	33.5
MGA_881	LOCUS_08740	sequence1:918605..919492(-)	partial			WP_010965345.1	3D domain-containing protein	88.8	45.2	27.6
MGA_894	LOCUS_08870	sequence1:931587..933296(-)	partial			WP_001829412.1	DNA polymerase III subunit gamma/tau	68.5	70.1	45.6
MGA_931	LOCUS_09240	sequence1:965742..965876(-)	internal_stop_codon	966027..966029(-)		WP_002681651.1	SMI1/KNR4 family protein	100.0	22.6	72.7
MGA_932	LOCUS_09250	sequence1:966027..966329(-)	internal_stop_codon	966027..966029(-)		WP_002681651.1	SMI1/KNR4 family protein	100.0	51.3	76.0
MGA_945	LOCUS_09380	sequence1:977578..977850(-)	frameshift		977589	WP_012027277.1	VOC family protein	96.7	68.0	67.8
MGA_953	LOCUS_09460	sequence1:983708..984196(-)	partial			WP_002672271.1	peptide-methionine (R)-S-oxide reductase MsrB	100.0	45.8	58.6
MGA_963	LOCUS_09560	sequence1:989570..989932(-)	partial			WP_011861830.1	helix-turn-helix transcriptional regulator	56.7	47.5	42.6
MGA_997	LOCUS_09900	sequence1:1038067..1038471(-)	frameshift		1038502	WP_000274796.1	MerR family transcriptional regulator	97.0	52.8	50.0
MGA_998	LOCUS_09910	sequence1:1038485..1038751(-)	frameshift,internal_stop_codon	1038776..1038778(-)	1038502	WP_002903717.1	MerR family transcriptional regulator	94.3	34.3	44.0
MGA_1046	LOCUS_10390	sequence1:1091071..1091397(-)	partial			WP_001830073.1	cell division protein FtsL	82.4	66.9	34.8
MGA_1064	LOCUS_10550	sequence1:1114178..1114681(-)	partial			WP_003243988.1	Rrf2 family transcriptional regulator	61.1	65.4	36.9
MGA_1086	LOCUS_10770	sequence1:1136772..1136897(+)	internal_stop_codon	1136895..1136897(+)		WP_001830662.1	FAD-dependent oxidoreductase	97.6	8.8	62.5
MGA_1087	LOCUS_10780	sequence1:1137015..1138136(+)	internal_stop_codon	1136895..1136897(+)		WP_001830662.1	FAD-dependent oxidoreductase	97.9	80.6	51.0
MGA_1095	LOCUS_10860	sequence1:1141725..1142144(-)	internal_stop_codon	1142253..1142255(-)		WP_011761791.1	cobalamin-independent methionine synthase II family protein	98.6	34.1	36.2
MGA_1096	LOCUS_10870	sequence1:1142253..1142915(-)	internal_stop_codon	1142253..1142255(-)		WP_011761791.1	cobalamin-independent methionine synthase II family protein	93.2	51.3	25.4
MGA_1106	LOCUS_10970	sequence1:1156131..1156658(-)	partial			WP_000551762.1	CtsR family transcriptional regulator	64.0	72.5	57.1
MGA_1111	LOCUS_11020	sequence1:1163566..1163811(-)	partial			WP_000759792.1	alpha/beta hydrolase	84.0	28.6	57.4
MGA_1141	LOCUS_11320	sequence1:1195655..1196125(-)	partial			WP_000818207.1	peptide-methionine (R)-S-oxide reductase MsrB	93.6	46.8	67.1
MGA_1153	LOCUS_11440	sequence1:1205466..1205741(-)	internal_stop_codon	1205772..1205774(-)		WP_000071680.1	DMT family transporter	90.1	26.8	41.5
MGA_1154	LOCUS_11450	sequence1:1205772..1206353(-)	internal_stop_codon	1205772..1205774(-)		WP_005808885.1	DMT family transporter	93.3	57.3	41.1
MGA_1164	LOCUS_11550	sequence1:1219326..1221875(+)	partial			WP_000672613.1	pneumococcal-type histidine triad protein	89.8	61.6	27.6
MGA_1171	LOCUS_11620	sequence1:1228842..1229462(-)	partial			WP_005815501.1	MptD family putative ECF transporter S component	68.9	76.2	29.5
MGA_1221	LOCUS_12120	sequence1:1290893..1291771(-)	internal_stop_codon	1291931..1291933(-)		WP_012545590.1	ABC transporter ATP-binding protein	79.8	42.6	27.0
MGA_1224	LOCUS_12150	sequence1:1294236..1295132(-)	partial			WP_041272719.1	recombinase family protein	94.6	52.5	39.8
MGA_1228	LOCUS_12190	sequence1:1296694..1297545(-)	partial			WP_001148136.1	SH3 domain-containing protein	58.7	37.0	34.2
MGA_1233	LOCUS_12240	sequence1:1301453..1304323(-)	partial			WP_000504568.1	phage tail tape measure protein	86.7	59.8	27.4
MGA_1246	LOCUS_12370	sequence1:1313132..1313353(-)	partial			WP_041272555.1	DUF4314 domain-containing protein	93.2	42.0	48.5
MGA_1247	LOCUS_12380	sequence1:1313728..1315188(-)	partial			WP_041272166.1	DNA cytosine methyltransferase	41.2	29.1	53.3
MGA_1255	LOCUS_12460	sequence1:1320710..1322959(-)	partial			WP_013531683.1	phage/plasmid primase, P4 family	41.9	69.0	30.5
MGA_1256	LOCUS_12470	sequence1:1322961..1323317(-)	partial			WP_011462007.1	hypothetical protein	74.6	65.4	33.7
MGA_1257	LOCUS_12480	sequence1:1323310..1323981(-)	partial			WP_010939456.1	phage regulatory protein	41.7	30.8	54.8
MGA_1265	LOCUS_12560	sequence1:1329525..1330763(+)	partial			WP_011461945.1	TIR domain-containing protein	33.5	44.4	32.4
MGA_1268	LOCUS_12590	sequence1:1332754..1333668(-)	partial			WP_000699969.1	S8 family serine peptidase	80.6	48.0	30.0
MGA_1280	LOCUS_12710	sequence1:1345706..1346824(-)	partial			WP_005811628.1	M23 family metallopeptidase	30.1	21.6	36.6
MGA_1294	LOCUS_12850	sequence1:1357014..1357379(-)	partial			WP_011182978.1	single-stranded DNA-binding protein	79.3	66.2	34.0
MGA_1298	LOCUS_12890	sequence1:1358210..1361194(-)	partial			WP_002352221.1	cell surface antigen I/II	38.4	24.5	51.0
MGA_1308	LOCUS_12990	sequence1:1371520..1372287(-)	partial			WP_010921270.1	alpha/beta hydrolase	96.1	57.1	30.3
MGA_1330	LOCUS_13210	sequence1:1398355..1400379(-)	partial			WP_011101402.1	membrane protein	63.2	63.6	21.7
MGA_1331	LOCUS_13220	sequence1:1400381..1401382(-)	partial			WP_000975351.1	poly(ribitol-phosphate) beta-N-acetylglucosaminyltransferase	58.6	34.7	23.2
MGA_1355	LOCUS_13460	sequence1:1426737..1427702(-)	partial			WP_001831275.1	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	86.9	32.5	37.2
MGA_1370	LOCUS_13610	sequence1:1443320..1445494(+)	partial			WP_004398589.1	PBP1A family penicillin-binding protein	86.2	67.6	39.9
MGA_1421	LOCUS_14100	sequence1:1506588..1507409(-)	partial			WP_003435927.1	ABC transporter permease	51.6	48.4	29.1
MGA_1452	LOCUS_14410	sequence1:1537277..1537981(-)	partial			WP_003229340.1	RDD family protein	56.8	81.7	44.1
MGA_1474	LOCUS_14630	sequence1:1560502..1561047(+)	partial			WP_003022397.1	VTT domain-containing protein	75.1	55.6	27.5
MGA_1482	LOCUS_14710	sequence1:1568809..1569777(-)	partial			WP_001042655.1	transglycosylase SLT domain-containing protein	59.6	80.8	38.1
MGA_1494	LOCUS_14830	sequence1:1580109..1583549(-)	partial			WP_011837563.1	Cna B-type domain-containing protein	95.8	71.3	36.8
MGA_1495	LOCUS_14840	sequence1:1584550..1587123(-)	partial			WP_011837563.1	Cna B-type domain-containing protein	94.5	53.8	31.9
MGA_1496	LOCUS_14850	sequence1:1587816..1590956(-)	partial			WP_011837563.1	Cna B-type domain-containing protein	96.6	65.9	35.5
MGA_1503	LOCUS_14920	sequence1:1600832..1608187(-)	partial			WP_002379133.1	isopeptide-forming domain-containing fimbrial protein	24.2	61.6	24.7
MGA_1566	LOCUS_15550	sequence1:1660622..1661143(-)	partial			WP_011861289.1	HAD-IC family P-type ATPase	72.8	16.7	34.4
MGA_1577	LOCUS_15660	sequence1:1673470..1674402(+)	partial			WP_003226718.1	nucleoside triphosphate pyrophosphohydrolase	71.3	45.0	43.2
MGA_1581	LOCUS_15700	sequence1:1676341..1677828(-)	partial			WP_011108459.1	SMI1/KNR4 family protein	36.6	55.5	55.6
MGA_1586	LOCUS_15750	sequence1:1681092..1681613(+)	partial			WP_010940018.1	rhodanese-like domain-containing protein	74.6	78.6	39.7
MGA_1593	LOCUS_15820	sequence1:1687860..1688864(-)	partial			WP_001044255.1	membrane protein	89.8	71.2	28.0
MGA_1595	LOCUS_15840	sequence1:1689756..1690742(-)	partial			WP_007052354.1	NlpC/P60 family protein	29.9	42.3	42.9
MGA_1597	LOCUS_15860	sequence1:1691867..1692442(+)	partial			WP_002262179.1	TlpA disulfide reductase family protein	74.9	78.6	55.1
MGA_1598	LOCUS_15870	sequence1:1692574..1692933(-)	partial			WP_002903452.1	DUF1310 family protein	74.8	68.5	47.2
MGA_1606	LOCUS_15950	sequence1:1701383..1701748(+)	frameshift,internal_stop_codon	1701726..1701728(+)	1701724	WP_128736376.1	ISL3-like element ISP1 family transposase	87.6	22.9	37.7
MGA_1607	LOCUS_15960	sequence1:1701771..1702280(+)	frameshift		1701745,1702274	WP_001059647.1	ISL3 family transposase	97.0	37.9	42.8
MGA_1608	LOCUS_15970	sequence1:1702292..1702747(+)	frameshift,internal_stop_codon	1702269..1702271(+),1702260..1702262(+)	1702256	WP_001557163.1	ISL3-like element IS1181 family transposase	72.2	25.3	41.4
MGA_1609	LOCUS_15980	sequence1:1702858..1706193(-)	internal_stop_codon	1706452..1706454(-)		WP_018372426.1	SHIRT domain-containing protein	40.5	65.3	41.6
MGA_1610	LOCUS_15990	sequence1:1706452..1706847(-)	internal_stop_codon	1706452..1706454(-)		WP_018372426.1	SHIRT domain-containing protein	61.1	10.8	47.5
MGA_1612	LOCUS_16010	sequence1:1708094..1708687(-)	frameshift		1708129	WP_000436571.1	ISL3 family transposase	84.8	39.2	29.3
MGA_1617	LOCUS_16060	sequence1:1709991..1710281(-)	partial			WP_002294972.1	PspC domain-containing protein	68.8	63.2	37.3
MGA_1631	LOCUS_16200	sequence1:1723418..1724095(+)	partial			WP_010922095.1	glucosaminidase domain-containing protein	90.7	55.5	33.8
MGA_1648	LOCUS_16370	sequence1:1736773..1737165(-)	frameshift		1737173	WP_002681626.1	ankyrin repeat domain-containing protein	74.6	27.4	54.6
MGA_1649	LOCUS_16380	sequence1:1737147..1737413(-)	frameshift		1737173	WP_002681626.1	ankyrin repeat domain-containing protein	85.2	21.2	68.0
MGA_1671	LOCUS_16600	sequence1:1753928..1754215(-)	internal_stop_codon	1754252..1754254(-)		WP_011016095.1	DUF3290 domain-containing protein	100.0	63.3	44.2
MGA_1677	LOCUS_16660	sequence1:1758122..1758946(-)	partial			WP_000022803.1	protein jag	55.5	74.1	41.3