{ "type": "genome", "identifier": "GCF_900476055.1", "organism": "Streptococcus australis", "title": "Streptococcus australis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900476055.1", "bioproject": "PRJNA224116", "biosample": "SAMEA103899862", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "113107", "species_taxid": "113107", "organism_name": "Streptococcus australis", "infraspecific_name": "strain=NCTC13166", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/17", "asm_name": "53750_F01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900476055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/476/055/GCF_900476055.1_53750_F01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2161464", "genome_size_ungapped": "2161464", "gc_percent": "42.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900476055.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2066", "protein_coding_gene_count": "1951", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-17", "dateModified": "2018-06-17", "datePublished": "2018-06-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus australis" ], "sample_taxid": [ "113107" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.607 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2161464", "Number of Sequences": "1", "Longest Sequences (bp)": "2161464", "N50 (bp)": "2161464", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.9", "Number of CDSs": "1995", "Average Protein Length": "316.9", "Coding Ratio (%)": "87.8", "Number of rRNAs": "12", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus australis", "strain": "strain=NCTC13166", "accession": "GCA_900476055.1", "taxid": 113107, "species_taxid": 113107, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 719, "total_fragments": 720, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus australis", "strain": "strain=ATCC 700641", "accession": "GCA_000186465.1", "taxid": 113107, "species_taxid": 113107, "relation_to_type": "type", "validated": true, "ani": 99.959, "matched_fragments": 700, "total_fragments": 720, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus australis", "strain": "strain=ATCC 700641", "accession": "GCA_000222745.2", "taxid": 113107, "species_taxid": 113107, "relation_to_type": "type", "validated": true, "ani": 99.9194, "matched_fragments": 684, "total_fragments": 720, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus xiaochunlingii", "strain": "strain=E24", "accession": "GCA_006385805.1", "taxid": 2589788, "species_taxid": 2589788, "relation_to_type": "type", "validated": true, "ani": 93.6457, "matched_fragments": 559, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ilei", "strain": "strain=I-G2", "accession": "GCA_000479335.1", "taxid": 1156431, "species_taxid": 1156431, "relation_to_type": "type", "validated": true, "ani": 92.6802, "matched_fragments": 582, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus koreensis", "strain": "strain=JS71", "accession": "GCA_003627135.1", "taxid": 2382163, "species_taxid": 2382163, "relation_to_type": "type", "validated": true, "ani": 92.5008, "matched_fragments": 590, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus rubneri", "strain": "strain=DSM 26920", "accession": "GCA_004785935.1", "taxid": 1234680, "species_taxid": 1234680, "relation_to_type": "type", "validated": true, "ani": 91.8466, "matched_fragments": 581, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasanguinis", "strain": "strain=NCTC12854", "accession": "GCA_900459355.1", "taxid": 1318, "species_taxid": 1318, "relation_to_type": "suspected-type", "validated": true, "ani": 85.6407, "matched_fragments": 442, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasanguinis", "strain": "strain=ATCC 15912", "accession": "GCA_000164675.2", "taxid": 1318, "species_taxid": 1318, "relation_to_type": "suspected-type", "validated": true, "ani": 85.5324, "matched_fragments": 446, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 81.5346, "matched_fragments": 213, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 79.4702, "matched_fragments": 118, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 79.2641, "matched_fragments": 89, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 78.8959, "matched_fragments": 115, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000186465.1", "gtdb_species": "s__Streptococcus australis", "ani": 99.959, "matched_fragments": 700, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.56", "min_intra_species_ani": "95.15", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_004166885.1", "gtdb_species": "s__Streptococcus sp004166885", "ani": 93.6636, "matched_fragments": 575, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.19", "min_intra_species_ani": "95.32", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_006385805.1", "gtdb_species": "s__Streptococcus xiaochunlingii", "ani": 93.6457, "matched_fragments": 559, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.12", "min_intra_species_ani": "95.36", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_015553625.1", "gtdb_species": "s__Streptococcus australis_B", "ani": 93.5533, "matched_fragments": 588, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.97", "min_intra_species_ani": "95.85", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_902363395.1", "gtdb_species": "s__Streptococcus sp902363395", "ani": 93.5291, "matched_fragments": 578, 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"d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.43", "min_intra_species_ani": "95.11", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_004785935.1", "gtdb_species": "s__Streptococcus rubneri", "ani": 91.9225, "matched_fragments": 577, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "96.92", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000314795.2", "gtdb_species": "s__Streptococcus sp000314795", "ani": 88.0367, "matched_fragments": 472, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902373455.1", "gtdb_species": "s__Streptococcus sp902373455", "ani": 85.473, "matched_fragments": 229, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.157, "cell_length": -0.167, "doubling_h": -0.216, "growth_tmp": 37.0, "optimum_tmp": 36.284, "optimum_ph": 6.89, "genome_size": 2146409.0, "gc_content": 41.9, "coding_genes": 1956.0, "rRNA16S_genes": 4.791, "tRNA_genes": 62.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.285, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.969, "thermophilic_range_tmp": 0.03, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptococcus", "australis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }