{ "type": "genome", "identifier": "GCF_900478035.1", "organism": "Corynebacterium renale", "title": "Corynebacterium renale", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900478035.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4030736", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1724", "species_taxid": "1724", "organism_name": "Corynebacterium renale", "infraspecific_name": "strain=NCTC7448", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/17", "asm_name": "47555_E02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900478035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/478/035/GCF_900478035.1_47555_E02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2335089", "genome_size_ungapped": "2335089", "gc_percent": "59.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900478035.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2205", "protein_coding_gene_count": "2125", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-17", "dateModified": "2018-06-17", "datePublished": "2018-06-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium renale" ], "sample_taxid": [ "1724" ], "sample_host_organism": [ "Cow" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.663 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2335089", "Number of Sequences": "1", "Longest Sequences (bp)": "2335089", "N50 (bp)": "2335089", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.1", "Number of CDSs": "2199", "Average Protein Length": "316.4", "Coding Ratio (%)": "89.4", "Number of rRNAs": "12", "Number of tRNAs": "53", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium renale", "strain": "strain=NCTC7448", "accession": "GCA_900478035.1", "taxid": 1724, "species_taxid": 1724, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 776, "total_fragments": 778, "ani_threshold": 95, "status": "conclusive" }, { 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"strain=NCTC764", "accession": "GCA_900447675.1", "taxid": 43770, "species_taxid": 43770, "relation_to_type": "type", "validated": true, "ani": 78.5611, "matched_fragments": 129, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium callunae", "strain": "strain=DSM 20147", "accession": "GCA_000344785.1", "taxid": 1721, "species_taxid": 1721, "relation_to_type": "type", "validated": true, "ani": 78.5432, "matched_fragments": 93, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium vitaeruminis", "strain": "strain=DSM 20294", "accession": "GCA_000550805.1", "taxid": 38305, "species_taxid": 38305, "relation_to_type": "type", "validated": true, "ani": 78.4723, "matched_fragments": 145, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium striatum", "strain": "strain=FDAARGOS_1054", "accession": "GCA_016403285.1", 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"optimum_ph": 7.292, "genome_size": 2336227.25, "gc_content": 59.15, "coding_genes": 2087.5, "rRNA16S_genes": 4.282, "tRNA_genes": 53.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.75, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.985, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.014, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Corynebacterium", "renale" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }