{
    "type": "genome",
    "identifier": "GCF_900604345.1",
    "organism": "Maliibacterium massiliense",
    "title": "Maliibacterium massiliense",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "URMITE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900604345.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA4979980",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2086585",
        "species_taxid": "2086585",
        "organism_name": "Maliibacterium massiliense",
        "infraspecific_name": "strain=Marseille-P3954",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/10/22",
        "asm_name": "PRJEB24952",
        "asm_submitter": "URMITE",
        "gbrs_paired_asm": "GCA_900604345.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/604/345/GCF_900604345.1_PRJEB24952",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2422126",
        "genome_size_ungapped": "2422126",
        "gc_percent": "61.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900604345.1-RS_2024_05_21",
        "annotation_date": "2024-05-21",
        "total_gene_count": "2324",
        "protein_coding_gene_count": "2252",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-10-22",
    "dateModified": "2018-10-22",
    "datePublished": "2018-10-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Maliibacterium massiliense"
        ],
        "sample_taxid": [
            "2086585"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.672 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2422126",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2422126",
        "N50 (bp)": "2422126",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.8",
        "Number of CDSs": "2265",
        "Average Protein Length": "304.7",
        "Coding Ratio (%)": "85.5",
        "Number of rRNAs": "9",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Fournierella massiliensis",
                "strain": "strain=DSM 100451",
                "accession": "GCA_004345265.1",
                "taxid": 1650663,
                "species_taxid": 1650663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4806,
                "matched_fragments": 51,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gehongia tenuis",
                "strain": "strain=NSJ-53",
                "accession": "GCA_014384795.1",
                "taxid": 2763655,
                "species_taxid": 2763655,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.785,
                "matched_fragments": 58,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corallococcus exiguus",
                "strain": "strain=DSM 14696",
                "accession": "GCA_009909105.1",
                "taxid": 83462,
                "species_taxid": 83462,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.059,
                "matched_fragments": 69,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corallococcus interemptor",
                "strain": "strain=AB047A",
                "accession": "GCA_003668875.1",
                "taxid": 2316720,
                "species_taxid": 2316720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0444,
                "matched_fragments": 64,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corallococcus llansteffanensis",
                "strain": "strain=CA051B",
                "accession": "GCA_003612055.1",
                "taxid": 2316731,
                "species_taxid": 2316731,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8946,
                "matched_fragments": 69,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azohydromonas australica",
                "strain": "strain=DSM 1124",
                "accession": "GCA_000430725.1",
                "taxid": 364039,
                "species_taxid": 364039,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7964,
                "matched_fragments": 90,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900604345.1",
                "gtdb_species": "s__MARSEILLE-P3954 sp900604345",
                "ani": 100.0,
                "matched_fragments": 806,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__MARSEILLE-P3954;g__MARSEILLE-P3954",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900550525.1",
                "gtdb_species": "s__Aphodomorpha intestinavium",
                "ani": 77.6538,
                "matched_fragments": 63,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-138;g__Aphodomorpha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.57",
                "min_intra_species_ani": "98.50",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_904393115.1",
                "gtdb_species": "s__Spyradocola merdavium",
                "ani": 77.1411,
                "matched_fragments": 101,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__UBA1750;g__Spyradocola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "98.61",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_002492415.1",
                "gtdb_species": "s__Spyradocola sp002492415",
                "ani": 76.8954,
                "matched_fragments": 64,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__UBA1750;g__Spyradocola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018712885.1",
                "gtdb_species": "s__Pullichristensenella stercoripullorum",
                "ani": 76.6124,
                "matched_fragments": 50,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Pullichristensenella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018716505.1",
                "gtdb_species": "s__Faecaligallichristensenella faecipullorum",
                "ani": 76.6025,
                "matched_fragments": 58,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Faecaligallichristensenella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.68",
                "min_intra_species_ani": "98.68",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017432405.1",
                "gtdb_species": "s__UBA2862 sp017432405",
                "ani": 76.5945,
                "matched_fragments": 64,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__UBA2862",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902764285.1",
                "gtdb_species": "s__UBA2862 sp902764285",
                "ani": 76.5759,
                "matched_fragments": 76,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__UBA2862",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902801165.1",
                "gtdb_species": "s__UBA2862 sp902801165",
                "ani": 76.5603,
                "matched_fragments": 78,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__UBA2862",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004563405.1",
                "gtdb_species": "s__SFTH01 sp004563405",
                "ani": 76.4361,
                "matched_fragments": 71,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__SFTH01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004554085.1",
                "gtdb_species": "s__SFTH01 sp004554085",
                "ani": 76.3396,
                "matched_fragments": 72,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__SFTH01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017410455.1",
                "gtdb_species": "s__UBA11524 sp017410455",
                "ani": 76.1999,
                "matched_fragments": 66,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__UBA11524",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017936765.1",
                "gtdb_species": "s__UBA11524 sp017936765",
                "ani": 75.6142,
                "matched_fragments": 50,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__UBA11524",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.73",
                "min_intra_species_ani": "96.73",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Maliibacterium",
        "massiliense"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}