{ "type": "genome", "identifier": "GCF_900605005.1", "organism": "Acidipropionibacterium timonense", "title": "Acidipropionibacterium timonense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900605005.1", "bioproject": "PRJNA224116", "biosample": "SAMEA5040251", "wgs_master": "UWPF00000000.1", "refseq_category": "reference genome", "taxid": "2161818", "species_taxid": "2161818", "organism_name": "Acidipropionibacterium timonense", "infraspecific_name": "strain=Marseille-P4482", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/18", "asm_name": "PRJEB25873", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900605005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/605/005/GCF_900605005.1_PRJEB25873", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2816509", "genome_size_ungapped": "2813751", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900605005.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "2644", "protein_coding_gene_count": "2522", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-18", "dateModified": "2018-11-18", "datePublished": "2018-11-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidipropionibacterium timonense" ], "sample_taxid": [ "2161818" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.754 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2816509", "Number of Sequences": "15", "Longest Sequences (bp)": "2774835", "N50 (bp)": "2774835", "Gap Ratio (%)": "0.100443", "GCcontent (%)": "69.3", "Number of CDSs": "2651", "Average Protein Length": "318.1", "Coding Ratio (%)": "89.8", "Number of rRNAs": "6", "Number of tRNAs": "46", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acidipropionibacterium acidipropionici", "strain": "strain=DSM 4900", "accession": "GCA_000427845.1", "taxid": 1748, "species_taxid": 1748, "relation_to_type": "type", "validated": true, "ani": 80.7093, "matched_fragments": 470, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidipropionibacterium acidipropionici", "strain": "strain=CGMCC 1.2230", "accession": "GCA_001441165.1", "taxid": 1748, "species_taxid": 1748, "relation_to_type": "type", "validated": true, "ani": 80.6801, "matched_fragments": 498, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cutibacterium granulosum", "strain": "strain=NCTC11865", "accession": "GCA_900186975.1", "taxid": 33011, "species_taxid": 33011, "relation_to_type": "type", "validated": true, "ani": 80.5261, "matched_fragments": 390, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidipropionibacterium jensenii", "strain": "strain=DSM 20535", "accession": "GCA_000425285.1", "taxid": 1749, "species_taxid": 1749, "relation_to_type": "type", "validated": true, "ani": 80.4956, "matched_fragments": 440, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cutibacterium granulosum", "strain": "strain=DSM 20700", "accession": "GCA_001700755.2", "taxid": 33011, "species_taxid": 33011, "relation_to_type": "type", "validated": true, "ani": 80.3993, "matched_fragments": 381, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidipropionibacterium virtanenii", "strain": "strain=JS278", "accession": "GCA_003325455.1", "taxid": 2057246, "species_taxid": 2057246, "relation_to_type": "type", "validated": true, "ani": 80.389, "matched_fragments": 443, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cutibacterium granulosum", "strain": "strain=DSM 20700", "accession": "GCA_000463665.1", "taxid": 33011, "species_taxid": 33011, "relation_to_type": "type", "validated": true, "ani": 80.2982, "matched_fragments": 313, "total_fragments": 931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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