{ "type": "genome", "identifier": "GCF_900609065.1", "organism": "Arthrobacter ulcerisalmonis", "title": "Arthrobacter ulcerisalmonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INSTITUT PASTEUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900609065.1", "bioproject": "PRJNA224116", "biosample": "SAMEA5065399", "wgs_master": "UXAU00000000.1", "refseq_category": "reference genome", "taxid": "2483813", "species_taxid": "2483813", "organism_name": "Arthrobacter ulcerisalmonis", "infraspecific_name": "na", "isolate": "aT11b", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/18", "asm_name": "aT11b", "asm_submitter": "INSTITUT PASTEUR", "gbrs_paired_asm": "GCA_900609065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/609/065/GCF_900609065.1_aT11b", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3516484", "genome_size_ungapped": "3516174", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "73", "contig_count": "73", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900609065.1-RS_2024_05_13", "annotation_date": "2024-05-13", "total_gene_count": "3344", "protein_coding_gene_count": "3218", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-18", "dateModified": "2018-11-18", "datePublished": "2018-11-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Arthrobacter ulcerisalmonis" ], "sample_taxid": [ "2483813" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.986 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3516484", "Number of Sequences": "73", "Longest Sequences (bp)": "423350", "N50 (bp)": "136051", "Gap Ratio (%)": "0.008816", "GCcontent (%)": "64.3", "Number of CDSs": "3301", "Average Protein Length": "317.7", "Coding Ratio (%)": "89.5", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arthrobacter ulcerisalmonis", "strain": "", "accession": "GCA_900609065.1", "taxid": 2483813, "species_taxid": 2483813, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1140, "total_fragments": 1143, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudarthrobacter equi", "strain": "strain=IMMIB L-1606", "accession": "GCA_900105535.1", "taxid": 728066, "species_taxid": 728066, "relation_to_type": "type", "validated": true, "ani": 81.1578, "matched_fragments": 692, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter chlorophenolicus", "strain": "strain=A6", "accession": "GCA_000022025.1", "taxid": 85085, "species_taxid": 85085, "relation_to_type": "type", "validated": true, "ani": 81.111, "matched_fragments": 698, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter chlorophenolicus", "strain": "strain=A6", "accession": "GCA_900104315.1", "taxid": 85085, "species_taxid": 85085, "relation_to_type": "type", "validated": true, "ani": 81.0987, "matched_fragments": 702, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter polychromogenes", "strain": "strain=CGMCC 1.1927", "accession": "GCA_014644495.1", "taxid": 1676, "species_taxid": 1676, "relation_to_type": "type", "validated": true, "ani": 81.053, "matched_fragments": 643, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter scleromae", "strain": "strain=CGMCC 1.3601", "accession": "GCA_014644515.1", "taxid": 158897, "species_taxid": 158897, "relation_to_type": "type", "validated": true, "ani": 80.9802, "matched_fragments": 652, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter siccitolerans", "strain": "strain=4J27", "accession": "GCA_001046895.1", "taxid": 861266, "species_taxid": 861266, "relation_to_type": "type", "validated": true, "ani": 80.9552, "matched_fragments": 670, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter psychrotolerans", "strain": "strain=YJ56", "accession": "GCA_009911795.1", "taxid": 2697569, "species_taxid": 2697569, "relation_to_type": "type", "validated": true, "ani": 80.9256, "matched_fragments": 651, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter phenanthrenivorans", "strain": "strain=Sphe3", "accession": "GCA_000189535.1", "taxid": 361575, "species_taxid": 361575, "relation_to_type": "type", "validated": true, "ani": 80.9142, "matched_fragments": 647, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter sulfonivorans", "strain": "strain=ALL", "accession": "GCA_014712225.1", "taxid": 121292, "species_taxid": 121292, "relation_to_type": "type", "validated": true, "ani": 80.8751, "matched_fragments": 620, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter globiformis", "strain": "strain=NBRC 12137", "accession": "GCA_000238915.2", "taxid": 1665, "species_taxid": 1665, "relation_to_type": "type", "validated": true, "ani": 80.219, "matched_fragments": 574, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter pascens", "strain": "strain=DSM 20545", "accession": "GCA_017052465.1", "taxid": 1677, "species_taxid": 1677, "relation_to_type": "type", "validated": true, "ani": 80.0593, "matched_fragments": 556, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter cupressi", "strain": "strain=DSM 24664", "accession": "GCA_013409905.1", "taxid": 1045773, "species_taxid": 1045773, "relation_to_type": "type", "validated": true, "ani": 79.8908, "matched_fragments": 517, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenarthrobacter nicotinovorans", "strain": "strain=ATCC 49919", "accession": "GCA_021919345.1", "taxid": 29320, "species_taxid": 29320, "relation_to_type": "suspected-type", "validated": true, "ani": 79.5068, "matched_fragments": 482, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_017898065.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 78.2561, "matched_fragments": 300, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_018622995.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 78.2532, "matched_fragments": 306, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_018866305.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 78.1765, "matched_fragments": 276, "total_fragments": 1143, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900609065.1", "gtdb_species": "s__Pseudarthrobacter ulcerisalmonis", "ani": 100.0, "matched_fragments": 1140, "total_fragments": 1143, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Pseudarthrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001424565.1", "gtdb_species": "s__Pseudarthrobacter sp001424565", "ani": 82.0644, "matched_fragments": 772, "total_fragments": 1143, "gtdb_taxonomy": 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