{ "type": "genome", "identifier": "GCF_900625065.1", "organism": "Prevotella marseillensis", "title": "Prevotella marseillensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900625065.1", "bioproject": "PRJNA224116", "biosample": "SAMEA5131176", "wgs_master": "UYXY00000000.1", "refseq_category": "reference genome", "taxid": "2479840", "species_taxid": "2479840", "organism_name": "Prevotella marseillensis", "infraspecific_name": "strain=Marseille-P8229", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/05", "asm_name": "PRJEB29221", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900625065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/625/065/GCF_900625065.1_PRJEB29221", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4160700", "genome_size_ungapped": "4160700", "gc_percent": "46.000000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900625065.1-RS_2024_04_01", "annotation_date": "2024-04-01", "total_gene_count": "3255", "protein_coding_gene_count": "3128", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-05", "dateModified": "2018-12-05", "datePublished": "2018-12-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella marseillensis" ], "sample_taxid": [ "2479840" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], 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"status": "below_threshold" }, { "organism_name": "Sodaliphilus pleomorphus", "strain": "strain=Oil-RF-744-WCA-WT-10", "accession": "GCA_009676955.1", "taxid": 2606626, "species_taxid": 2606626, "relation_to_type": "type", "validated": true, "ani": 81.8514, "matched_fragments": 61, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sodaliphilus pleomorphus", "strain": "strain=Oil-RF-744-WCA-WT-10", "accession": "GCA_009696565.1", "taxid": 2606626, "species_taxid": 2606626, "relation_to_type": "type", "validated": true, "ani": 81.3735, "matched_fragments": 52, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lascolaii", "strain": "strain=khD1", "accession": "GCA_900079775.1", "taxid": 1776379, "species_taxid": 1776379, "relation_to_type": "type", "validated": true, "ani": 81.3082, "matched_fragments": 205, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella stercorea", "strain": "strain=DSM 18206", "accession": "GCA_000235885.1", "taxid": 363265, "species_taxid": 363265, "relation_to_type": "suspected-type", "validated": true, "ani": 80.8757, "matched_fragments": 173, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola intestinalis", "strain": "strain=Sa1CVN1", "accession": "GCA_014837065.1", "taxid": 2762212, "species_taxid": 2762212, "relation_to_type": "type", "validated": true, "ani": 80.7309, "matched_fragments": 70, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylanibacter rodentium", "strain": "strain=PROD", "accession": "GCA_013166575.1", "taxid": 2736289, "species_taxid": 2736289, "relation_to_type": "type", "validated": true, "ani": 80.5829, "matched_fragments": 157, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella koreensis", "strain": "strain=KCOM 3155", "accession": "GCA_003977605.1", "taxid": 2490854, "species_taxid": 2490854, "relation_to_type": "type", "validated": true, "ani": 79.5107, "matched_fragments": 114, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella marshii", "strain": "strain=DSM 16973", "accession": "GCA_000146675.1", "taxid": 189722, "species_taxid": 189722, "relation_to_type": "type", "validated": true, "ani": 79.032, "matched_fragments": 59, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleniella intestinalis", "strain": "strain=PINT", "accession": "GCA_013166595.1", "taxid": 2736291, "species_taxid": 2736291, "relation_to_type": "type", "validated": true, "ani": 78.9892, "matched_fragments": 99, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella marshii", "strain": "strain=JCM 13450", "accession": "GCA_000613625.1", 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"matched_fragments": 69, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella faecis", "strain": "strain=CLA-AA-H145", "accession": "GCA_018789675.1", "taxid": 2841596, "species_taxid": 2841596, "relation_to_type": "type", "validated": true, "ani": 76.9565, "matched_fragments": 105, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella paludivivens", "strain": "strain=DSM 17968", "accession": "GCA_000373185.1", "taxid": 185294, "species_taxid": 185294, "relation_to_type": "type", "validated": true, "ani": 76.8122, "matched_fragments": 66, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001275135.1", "gtdb_species": "s__Prevotella rara", "ani": 97.7568, "matched_fragments": 1061, "total_fragments": 1374, "gtdb_taxonomy": 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