{ "type": "genome", "identifier": "GCF_900626105.1", "organism": "Gulosibacter massiliensis", "title": "Gulosibacter massiliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900626105.1", "bioproject": "PRJNA224116", "biosample": "SAMEA5137605", "wgs_master": "UYZX00000000.1", "refseq_category": "reference genome", "taxid": "2479839", "species_taxid": "2479839", "organism_name": "Gulosibacter massiliensis", "infraspecific_name": "strain=Marseille-P7157", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/05", "asm_name": "PRJEB29220", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900626105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/626/105/GCF_900626105.1_PRJEB29220", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2730597", "genome_size_ungapped": "2730597", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900626105.1-RS_2024_06_07", "annotation_date": "2024-06-07", "total_gene_count": "2592", "protein_coding_gene_count": "2495", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-05", "dateModified": "2018-12-05", "datePublished": "2018-12-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Gulosibacter massiliensis" ], "sample_taxid": [ "2479839" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.741 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2730597", "Number of Sequences": "2", "Longest Sequences (bp)": "2075628", "N50 (bp)": "2075628", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.2", "Number of CDSs": "2614", "Average Protein Length": "319.3", "Coding Ratio (%)": "91.7", "Number of rRNAs": "6", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gulosibacter faecalis", "strain": "strain=B187", "accession": "GCA_000381765.1", "taxid": 272240, "species_taxid": 272240, "relation_to_type": "type", "validated": true, "ani": 84.3972, "matched_fragments": 653, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter molinativorax", "strain": "strain=ON4", "accession": "GCA_003010915.2", "taxid": 256821, "species_taxid": 256821, "relation_to_type": "type", "validated": true, "ani": 79.8732, "matched_fragments": 403, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter molinativorax", "strain": "strain=DSM 13485", "accession": "GCA_000425685.1", "taxid": 256821, "species_taxid": 256821, "relation_to_type": "type", "validated": true, "ani": 79.6458, "matched_fragments": 392, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter macacae", "strain": "strain=YIM 102482-1", "accession": "GCA_003865375.1", "taxid": 2488791, "species_taxid": 2488791, "relation_to_type": "type", "validated": true, "ani": 79.158, "matched_fragments": 335, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoclavibacter chungangensis", "strain": "strain=DSM 23821", "accession": "GCA_013410545.1", "taxid": 587635, "species_taxid": 587635, "relation_to_type": "type", "validated": true, "ani": 78.4466, "matched_fragments": 365, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter bifidus", "strain": "strain=NBRC 103089", "accession": "GCA_001570925.1", "taxid": 272239, "species_taxid": 272239, "relation_to_type": "type", "validated": true, "ani": 78.3165, "matched_fragments": 252, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter chungangensis", "strain": "strain=KCTC 13959", "accession": "GCA_008831155.1", "taxid": 979746, "species_taxid": 979746, "relation_to_type": "type", "validated": true, "ani": 78.3026, "matched_fragments": 261, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoclavibacter chungangensis", "strain": "strain=DSM 23821", "accession": "GCA_008831135.1", "taxid": 587635, "species_taxid": 587635, "relation_to_type": "type", "validated": true, "ani": 78.2721, "matched_fragments": 353, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter hominis", "strain": "strain=401352-2018", "accession": "GCA_904842695.1", "taxid": 2770504, "species_taxid": 2770504, "relation_to_type": "type", "validated": true, "ani": 77.8027, "matched_fragments": 213, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces marinus", "strain": "strain=DSM 26151", "accession": "GCA_021442325.1", "taxid": 1389020, "species_taxid": 1389020, "relation_to_type": "type", "validated": true, "ani": 77.7239, "matched_fragments": 282, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium sorbitolivorans", "strain": "strain=CGMCC 1.15228", "accession": "GCA_003327285.1", "taxid": 1867410, "species_taxid": 1867410, "relation_to_type": "type", "validated": true, "ani": 77.6909, "matched_fragments": 281, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium sorbitolivorans", "strain": "strain=CGMCC 1.15228", "accession": "GCA_014641475.1", "taxid": 1867410, "species_taxid": 1867410, "relation_to_type": "type", "validated": true, "ani": 77.6487, "matched_fragments": 279, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces aurantiacus", "strain": "strain=DSM 14598", "accession": "GCA_016907355.1", "taxid": 165814, "species_taxid": 165814, "relation_to_type": "type", "validated": true, "ani": 77.6251, "matched_fragments": 343, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium atlanticum", "strain": "strain=WY121", "accession": "GCA_015277815.1", "taxid": 2782168, 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"validated": true, "ani": 76.2027, "matched_fragments": 208, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fulva", "strain": "strain=DKR-3", "accession": "GCA_018531375.1", "taxid": 2835530, "species_taxid": 2835530, "relation_to_type": "type", "validated": true, "ani": 76.1323, "matched_fragments": 209, "total_fragments": 909, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900626105.1", "gtdb_species": "s__Gulosibacter sp900626105", "ani": 100.0, "matched_fragments": 909, "total_fragments": 909, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Gulosibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.80", "min_intra_species_ani": "98.80", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", 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"coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Gulosibacter", "massiliensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }