{ "type": "genome", "identifier": "GCF_900635445.1", "organism": "Serratia odorifera", "title": "Serratia odorifera", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900635445.1", "bioproject": "PRJNA224116", "biosample": "SAMEA2612492", "wgs_master": "na", "refseq_category": "na", "taxid": "618", "species_taxid": "618", "organism_name": "Serratia odorifera", "infraspecific_name": "strain=NCTC11214", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/19", "asm_name": "28869_A02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900635445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/635/445/GCF_900635445.1_28869_A02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5272556", "genome_size_ungapped": "5272556", "gc_percent": "56.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900635445.1-RS_2024_04_05", "annotation_date": "2024-04-05", "total_gene_count": "5195", "protein_coding_gene_count": "4226", "non_coding_gene_count": "120", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-19", "dateModified": "2018-12-19", "datePublished": "2018-12-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Serratia odorifera" ], "sample_taxid": [ "618" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.485 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5272556", "Number of Sequences": "1", "Longest Sequences (bp)": "5272556", "N50 (bp)": "5272556", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.1", "Number of CDSs": "5741", "Average Protein Length": "263.0", "Coding Ratio (%)": "85.9", "Number of rRNAs": "22", "Number of tRNAs": "88", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Serratia odorifera", "strain": "strain=NCTC11214", "accession": "GCA_900635445.1", "taxid": 618, "species_taxid": 618, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1757, "total_fragments": 1757, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Serratia odorifera", "strain": "strain=DSM 4582", "accession": "GCA_000163595.1", "taxid": 618, "species_taxid": 618, "relation_to_type": "type", "validated": true, "ani": 99.8461, "matched_fragments": 1707, "total_fragments": 1757, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Serratia entomophila", "strain": "strain=A1", "accession": "GCA_021462285.1", "taxid": 42906, "species_taxid": 42906, "relation_to_type": "type", "validated": true, "ani": 83.6645, "matched_fragments": 1100, "total_fragments": 1757, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia rhizosphaerae", "strain": "strain=KUDC3025", "accession": "GCA_009817885.1", "taxid": 2597702, "species_taxid": 2597702, "relation_to_type": "type", "validated": true, "ani": 83.6235, "matched_fragments": 1115, "total_fragments": 1757, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia rubidaea", "strain": "strain=FDAARGOS_926", "accession": "GCA_016026735.1", "taxid": 61652, "species_taxid": 61652, "relation_to_type": "type", "validated": true, "ani": 83.6198, "matched_fragments": 1109, "total_fragments": 1757, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia rubidaea", "strain": "strain=NBRC 103169", "accession": "GCA_001598675.1", "taxid": 61652, "species_taxid": 61652, "relation_to_type": "type", "validated": true, "ani": 83.5072, "matched_fragments": 1086, "total_fragments": 1757, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia rubidaea", "strain": "strain=CIP 103234", "accession": "GCA_001304675.1", "taxid": 61652, "species_taxid": 61652, "relation_to_type": "type", "validated": true, "ani": 83.4318, "matched_fragments": 1019, "total_fragments": 1757, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia marcescens", "strain": "strain=ATCC 13880", "accession": "GCA_017654245.1", "taxid": 615, "species_taxid": 615, "relation_to_type": "suspected-type", 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Sm_S81_jyu2015", "accession": "GCA_017298875.1", "taxid": 615, "species_taxid": 615, "relation_to_type": "suspected-type", "validated": true, "ani": 83.4026, "matched_fragments": 1110, "total_fragments": 1757, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia marcescens", "strain": "strain=ATCC 13880 substr. Sm_S65_jyu2015", "accession": "GCA_017298975.1", "taxid": 615, "species_taxid": 615, "relation_to_type": "suspected-type", "validated": true, "ani": 83.3903, "matched_fragments": 1110, "total_fragments": 1757, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia nematodiphila", "strain": "strain=DSM 21420", "accession": "GCA_000738675.1", "taxid": 458197, "species_taxid": 458197, "relation_to_type": "suspected-type", "validated": true, "ani": 83.2395, "matched_fragments": 1119, "total_fragments": 1757, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia nevei", "strain": "strain=S15", "accession": "GCA_008364245.1", "taxid": 2703794, "species_taxid": 2703794, "relation_to_type": "type", "validated": true, "ani": 83.2341, "matched_fragments": 1098, "total_fragments": 1757, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia nematodiphila", "strain": "strain=CGMCC 1.6853", "accession": "GCA_900101535.1", "taxid": 458197, "species_taxid": 458197, "relation_to_type": "suspected-type", "validated": true, "ani": 83.2011, "matched_fragments": 1081, "total_fragments": 1757, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia bockelmannii", "strain": "strain=S3", "accession": "GCA_008011855.1", "taxid": 2703793, "species_taxid": 2703793, "relation_to_type": "type", "validated": true, "ani": 83.0981, "matched_fragments": 1075, "total_fragments": 1757, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia aphidicola", "strain": "strain=X001", "accession": "GCA_024169515.1", "taxid": 68334, "species_taxid": 68334, "relation_to_type": "type", "validated": true, "ani": 79.0753, "matched_fragments": 569, "total_fragments": 1757, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella rivi", "strain": "strain=FC061912-K", "accession": "GCA_019049655.1", "taxid": 2816249, "species_taxid": 2816249, 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