{ "type": "genome", "identifier": "GCF_900636035.1", "organism": "Shimwellia blattae", "title": "Shimwellia blattae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900636035.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3368262", "wgs_master": "na", "refseq_category": "na", "taxid": "563", "species_taxid": "563", "organism_name": "Shimwellia blattae", "infraspecific_name": "strain=NCTC12127", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/20", "asm_name": "38656_G01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900636035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/636/035/GCF_900636035.1_38656_G01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4152791", "genome_size_ungapped": "4152791", "gc_percent": "56.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-13", "total_gene_count": "3941", "protein_coding_gene_count": "3739", "non_coding_gene_count": "128", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-20", "dateModified": "2018-12-20", "datePublished": "2018-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Shimwellia blattae" ], "sample_taxid": [ "563" ], "sample_host_organism": [ "Cockroach" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.166 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4152791", "Number of Sequences": "1", "Longest Sequences (bp)": "4152791", "N50 (bp)": "4152791", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.5", "Number of CDSs": "3860", "Average Protein Length": "313.6", "Coding Ratio (%)": "87.4", "Number of rRNAs": "25", "Number of tRNAs": "88", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shimwellia blattae", "strain": "strain=NCTC12127", "accession": "GCA_900636035.1", "taxid": 563, "species_taxid": 563, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1384, "total_fragments": 1384, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Shimwellia blattae", "strain": "strain=DSM 4481", "accession": "GCA_000262305.1", "taxid": 563, "species_taxid": 563, "relation_to_type": "type", "validated": true, "ani": 99.9907, "matched_fragments": 1381, "total_fragments": 1384, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Shimwellia blattae", "strain": "strain=NBRC 105725", "accession": "GCA_000327265.1", "taxid": 563, "species_taxid": 563, "relation_to_type": "type", "validated": true, "ani": 99.9603, "matched_fragments": 1307, "total_fragments": 1384, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Shimwellia pseudoproteus", "strain": "strain=DSM 3038", "accession": "GCA_016415625.1", "taxid": 570012, "species_taxid": 570012, "relation_to_type": "type", "validated": true, "ani": 84.6231, "matched_fragments": 983, "total_fragments": 1384, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter dublinensis subsp. lausannensis", "strain": "strain=LMG 23824", 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"ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000262305.1", "gtdb_species": "s__Shimwellia blattae", "ani": 99.9907, "matched_fragments": 1381, "total_fragments": 1384, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Shimwellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_016415625.1", "gtdb_species": "s__Shimwellia pseudoproteus", "ani": 84.6231, "matched_fragments": 983, "total_fragments": 1384, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Shimwellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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