# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_2	LOCUS_00020	sequence1:641..1258(+)	frameshift,internal_stop_codon	595..597(+)	1248,465,1495,591	WP_011109621.1	hypothetical protein	95.1	26.6	32.7
MGA_3	LOCUS_00030	sequence1:1272..1577(+)	frameshift		1635,1660,1493,1246	WP_011109621.1	hypothetical protein	78.2	10.6	43.0
MGA_4	LOCUS_00040	sequence1:1662..1958(+)	frameshift,internal_stop_codon	1956..1958(+)	1635,2089,2154,1493,2009,2138,1660,2079	WP_044682503.1	ATPase AAA	100.0	12.4	37.6
MGA_5	LOCUS_00050	sequence1:2165..2443(+)	frameshift,internal_stop_codon	1956..1958(+)	2160,2353,2132,2085,2089,2572,2009	WP_011109621.1	hypothetical protein	68.5	8.5	44.4
MGA_6	LOCUS_00060	sequence1:2374..2577(+)	frameshift		2160,2353,2132,2572	WP_011109621.1	hypothetical protein	97.0	8.7	46.2
MGA_11	LOCUS_00110	sequence1:4243..4566(+)	frameshift		4530	WP_010774274.1	phage tail tip lysozyme	79.4	10.0	52.7
MGA_12	LOCUS_00120	sequence1:4623..5288(+)	frameshift		4530,5229	WP_000656702.1	phage tail tip lysozyme	91.4	22.0	40.3
MGA_14	LOCUS_00140	sequence1:5595..6011(+)	frameshift,internal_stop_codon	5521..5523(+),5515..5517(+)	5493	WP_002395055.1	hypothetical protein	100.0	66.3	39.1
MGA_20	LOCUS_00200	sequence1:10808..14374(+)	partial			WP_010774277.1	ArdC-like ssDNA-binding domain-containing protein	27.5	44.1	36.5
MGA_41	LOCUS_00410	sequence1:34289..34582(+)	frameshift		34306,34195	WP_012048283.1	SulP family inorganic anion transporter	94.8	17.0	57.4
MGA_73	LOCUS_00720	sequence1:66349..67425(+)	partial			WP_002365949.1	replication initiator protein A	61.2	60.1	28.1
MGA_75	LOCUS_00740	sequence1:67698..67964(+)	partial			WP_001080846.1	helix-turn-helix transcriptional regulator	67.0	41.8	55.9
MGA_78	LOCUS_00770	sequence1:71414..75193(+)	partial			WP_000167699.1	GbpC/Spa domain-containing protein	92.1	71.9	29.5
MGA_100	LOCUS_00990	sequence1:100911..101507(-)	partial			WP_002263013.1	hypothetical protein	26.3	24.6	51.9
MGA_132	LOCUS_01310	sequence1:128512..128727(-)	partial			WP_002919288.1	aminoacyltransferase	100.0	17.3	71.8
MGA_133	LOCUS_01320	sequence1:129232..129747(-)	internal_stop_codon	129232..129234(-)		WP_002263312.1	aminoacyltransferase	100.0	41.7	53.2
MGA_134	LOCUS_01330	sequence1:130132..131154(-)	frameshift		131342	WP_011837354.1	TrkH family potassium uptake protein	100.0	71.0	76.5
MGA_135	LOCUS_01340	sequence1:131163..131573(-)	frameshift		131342	WP_001043409.1	TrkH family potassium uptake protein	56.6	16.1	67.5
MGA_136	LOCUS_01350	sequence1:131577..131870(-)	internal_stop_codon	131919..131921(-)		WP_000691695.1	Trk system potassium transporter TrkA	100.0	21.6	78.4
MGA_137	LOCUS_01360	sequence1:131919..132926(-)	internal_stop_codon	131919..131921(-)		WP_011837353.1	Trk system potassium transporter TrkA	99.1	73.9	78.0
MGA_140	LOCUS_01390	sequence1:134796..135056(+)	partial			WP_011837350.1	phosphatase PAP2 family protein	94.2	37.5	64.2
MGA_142	LOCUS_01410	sequence1:136124..136507(+)	partial			WP_011837350.1	phosphatase PAP2 family protein	99.2	58.3	64.3
MGA_151	LOCUS_01500	sequence1:143191..143463(+)	frameshift		143379	WP_002900899.1	GyrI-like domain-containing protein	67.8	29.9	67.2
MGA_152	LOCUS_01510	sequence1:143457..143795(+)	frameshift		143379	WP_002900899.1	GyrI-like domain-containing protein	100.0	54.9	67.0
MGA_165	LOCUS_01640	sequence1:156769..157278(+)	frameshift,internal_stop_codon	156739..156741(+)	157263	WP_011987086.1	TraX family protein	95.9	60.5	28.8
MGA_214	LOCUS_02130	sequence1:205198..205425(+)	frameshift		205175	WP_002900787.1	helix-turn-helix transcriptional regulator	92.0	63.9	81.2
MGA_216	LOCUS_02150	sequence1:205668..205928(+)	partial			WP_000730279.1	DUF3169 family protein	93.0	32.8	55.0
MGA_258	LOCUS_02570	sequence1:253773..254051(+)	internal_stop_codon	254049..254051(+)		WP_002263641.1	GrpB family protein	96.7	44.3	59.6
MGA_259	LOCUS_02580	sequence1:254055..254339(+)	internal_stop_codon	254049..254051(+)		WP_002263641.1	GrpB family protein	98.9	46.3	64.5
MGA_262	LOCUS_02610	sequence1:255607..255780(+)	partial			WP_004612621.1	TfoX/Sxy family protein	93.0	50.0	73.6
MGA_274	LOCUS_02730	sequence1:268657..272103(+)	partial			WP_002900650.1	GBS Bsp-like repeat-containing protein	84.8	73.2	52.8
MGA_299	LOCUS_02980	sequence1:296265..296603(+)	partial			WP_010247013.1	type IV secretory system conjugative DNA transfer family protein	98.2	18.5	90.0
MGA_303	LOCUS_03020	sequence1:299361..299630(+)	frameshift		299325	WP_002681704.1	TfoX/Sxy family protein	100.0	84.0	77.5
MGA_306	LOCUS_03050	sequence1:300789..302249(+)	partial			WP_011241724.1	MobQ family relaxase	79.0	63.0	32.6
MGA_309	LOCUS_03080	sequence1:303543..303755(+)	partial			WP_010247013.1	type IV secretory system conjugative DNA transfer family protein	95.7	11.3	100.0
MGA_315	LOCUS_03140	sequence1:308596..310056(+)	partial			WP_011241757.1	MobQ family relaxase	53.1	37.6	42.1
MGA_318	LOCUS_03170	sequence1:311294..312493(+)	partial			WP_010247013.1	type IV secretory system conjugative DNA transfer family protein	100.0	67.2	97.2
MGA_368	LOCUS_03670	sequence1:369695..371092(+)	partial			WP_146623251.1	beta-glucoside-specific PTS transporter subunit IIABC	98.3	74.2	35.9
MGA_379	LOCUS_03780	sequence1:380988..381158(-)	partial			WP_002895160.1	DUF3042 family protein	71.4	71.4	90.0
MGA_406	LOCUS_04050	sequence1:411311..411445(+)	partial			WP_011836809.1	GNAT family N-acetyltransferase	81.8	24.5	75.0
MGA_479	LOCUS_04780	sequence1:482818..483318(-)	partial			WP_017409206.1	DNA-binding transcriptional regulator OxyR	51.8	28.9	39.5
MGA_483	LOCUS_04820	sequence1:486770..487210(+)	internal_stop_codon	486743..486745(+)		WP_011202637.1	carboxymuconolactone decarboxylase family protein	95.2	50.0	59.0
MGA_491	LOCUS_04900	sequence1:492782..493237(+)	partial			WP_010964318.1	ASCH domain-containing protein	75.5	71.3	43.0
MGA_495	LOCUS_04940	sequence1:496469..496825(+)	partial			WP_000566988.1	GNAT family N-acetyltransferase	100.0	71.1	92.4
MGA_499	LOCUS_04980	sequence1:499591..500436(+)	partial			WP_002262027.1	flavocytochrome c	92.5	32.4	77.7
MGA_505	LOCUS_05040	sequence1:506163..506366(+)	frameshift		506354	WP_011461573.1	alpha/beta hydrolase	80.6	20.2	44.4
MGA_520	LOCUS_05190	sequence1:517537..518100(+)	internal_stop_codon	518098..518100(+)		WP_011836679.1	DUF805 domain-containing protein	81.8	41.2	53.6
MGA_537	LOCUS_05360	sequence1:538100..539446(+)	partial			WP_010966092.1	glycoside hydrolase family 16 protein	41.7	76.8	60.5
MGA_539	LOCUS_05380	sequence1:540358..541125(+)	partial			WP_001067278.1	AraC family transcriptional regulator	87.1	53.5	29.3
MGA_560	LOCUS_05590	sequence1:562691..562867(+)	partial			WP_000048054.1	30S ribosomal protein S21	74.1	74.1	100.0
MGA_605	LOCUS_06040	sequence1:603931..606708(+)	partial			WP_010946812.1	DUF927 domain-containing protein	22.8	39.0	22.0
MGA_612	LOCUS_06110	sequence1:612887..613081(+)	partial			WP_001830627.1	ABC transporter ATP-binding protein	93.8	24.9	53.2
MGA_654	LOCUS_06530	sequence1:661018..661182(-)	frameshift		661035	WP_002284146.1	cell surface ecto-5'-nucleotidase Nt5e	72.2	5.3	61.5
MGA_668	LOCUS_06670	sequence1:672779..672952(-)	frameshift		672796	WP_002262590.1	VOC family protein	89.5	41.9	63.5
MGA_697	LOCUS_06960	sequence1:700378..700704(+)	partial			WP_010968620.1	helix-turn-helix transcriptional regulator	63.9	76.4	40.6
MGA_725	LOCUS_07240	sequence1:727347..727640(-)	frameshift,internal_stop_codon	727647..727649(-)	727779	WP_011837075.1	DUF1697 domain-containing protein	94.8	50.8	72.8
MGA_726	LOCUS_07250	sequence1:727753..727887(-)	frameshift,internal_stop_codon	727647..727649(-)	727779	WP_011837075.1	DUF1697 domain-containing protein	81.8	19.9	86.1
MGA_743	LOCUS_07420	sequence1:747575..748114(-)	internal_stop_codon	748157..748159(-)		WP_012775274.1	pneumococcal-type histidine triad protein	39.7	9.7	51.8
MGA_744	LOCUS_07430	sequence1:748157..749140(-)	frameshift,internal_stop_codon	748156..748158(-)	749229	WP_012775274.1	pneumococcal-type histidine triad protein	98.8	37.8	64.5
MGA_745	LOCUS_07440	sequence1:749473..749649(-)	frameshift,internal_stop_codon	749753..749755(-),749473..749475(-)	749668	WP_012775274.1	pneumococcal-type histidine triad protein	62.1	4.3	70.3
MGA_746	LOCUS_07450	sequence1:749753..750040(-)	frameshift,internal_stop_codon	749753..749755(-)	749692	WP_000678300.1	pneumococcal-type histidine triad protein	100.0	11.7	44.7
MGA_760	LOCUS_07590	sequence1:761036..766429(-)	partial			WP_207215633.1	MucBP domain-containing protein	44.8	70.0	37.2
MGA_771	LOCUS_07700	sequence1:778486..778914(+)	partial			WP_011836891.1	hypothetical protein	70.4	72.5	40.6
MGA_819	LOCUS_08180	sequence1:823903..824043(+)	partial			WP_002897213.1	SPJ_0845 family protein	67.4	68.9	90.3
MGA_862	LOCUS_08610	sequence1:871642..872325(-)	partial			WP_011837123.1	homoserine O-succinyltransferase	99.1	71.6	78.2
MGA_866	LOCUS_08650	sequence1:875425..875856(+)	partial			WP_003722868.1	YdcF family protein	94.4	39.0	49.6
MGA_916	LOCUS_09150	sequence1:936788..936958(+)	frameshift		936922	WP_010905663.1	metallophosphoesterase	80.4	18.5	55.6
MGA_917	LOCUS_09160	sequence1:936970..937572(+)	frameshift,internal_stop_codon	937571..937573(+)	936946	WP_011836763.1	metallophosphoesterase	100.0	69.9	68.5
MGA_926	LOCUS_09250	sequence1:948569..949747(-)	partial			WP_002680450.1	TPM domain-containing protein	51.8	76.1	34.4
MGA_974	LOCUS_09730	sequence1:1004543..1005139(-)	frameshift		1004584	WP_002903178.1	GNAT family N-acetyltransferase	88.4	70.9	49.1
MGA_978	LOCUS_09770	sequence1:1006826..1007398(-)	frameshift		1007418	WP_002262444.1	RpiB/LacA/LacB family sugar-phosphate isomerase	92.1	83.3	61.7
MGA_988	LOCUS_09870	sequence1:1014934..1015416(-)	internal_stop_codon	1015420..1015422(-)		WP_011837280.1	ABC transporter ATP-binding protein	100.0	55.6	61.9
MGA_989	LOCUS_09880	sequence1:1015420..1015800(-)	internal_stop_codon	1015420..1015422(-)		WP_011837280.1	ABC transporter ATP-binding protein	100.0	43.8	71.4
MGA_1004	LOCUS_10030	sequence1:1029521..1029754(-)	partial			WP_002262696.1	hypothetical protein	66.2	63.0	70.6
MGA_1070	LOCUS_10690	sequence1:1097073..1097423(-)	internal_stop_codon	1097073..1097075(-)		WP_168747012.1	DNA cytosine methyltransferase	90.5	27.8	45.7
MGA_1094	LOCUS_10930	sequence1:1122488..1122802(-)	partial			WP_002983650.1	DNA-directed RNA polymerase subunit omega	62.5	61.9	92.3
MGA_1137	LOCUS_11360	sequence1:1169515..1169742(-)	internal_stop_codon	1169515..1169517(-)		WP_002893668.1	response regulator transcription factor	100.0	37.7	78.7
MGA_1158	LOCUS_11570	sequence1:1190708..1191169(-)	partial			WP_001166913.1	hypothetical protein	95.4	34.9	54.8
MGA_1160	LOCUS_11590	sequence1:1191577..1192422(-)	partial			WP_010989483.1	hypothetical protein	84.3	69.6	24.1
MGA_1225	LOCUS_12230	sequence1:1256235..1256696(-)	frameshift		1256673	WP_009931832.1	glycoside hydrolase family 1 protein	90.2	28.4	79.0
MGA_1226	LOCUS_12240	sequence1:1256665..1257537(-)	frameshift,internal_stop_codon	1257628..1257630(-)	1256673	WP_009931832.1	glycoside hydrolase family 1 protein	100.0	59.5	62.5
MGA_1228	LOCUS_12260	sequence1:1259094..1259435(-)	frameshift		1259720,1259545	WP_011836499.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	86.7	13.1	95.9
MGA_1229	LOCUS_12270	sequence1:1259715..1260392(-)	frameshift		1259720,1259545	WP_011836499.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	99.6	29.9	87.5
MGA_1231	LOCUS_12290	sequence1:1260644..1261135(-)	partial			WP_011836499.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	95.7	20.8	89.1
MGA_1243	LOCUS_12410	sequence1:1273705..1277685(-)	partial			WP_002900650.1	GBS Bsp-like repeat-containing protein	52.6	52.2	43.4
MGA_1264	LOCUS_12620	sequence1:1298517..1302962(-)	partial			WP_164691239.1	SpaA isopeptide-forming pilin-related protein	87.6	38.9	21.3
MGA_1267	LOCUS_12650	sequence1:1304457..1305161(-)	frameshift		1305105	WP_012027102.1	permease	90.2	69.4	39.8
MGA_1308	LOCUS_13060	sequence1:1352524..1352784(+)	partial			WP_002359328.1	DUF3173 domain-containing protein	67.4	81.4	48.3
MGA_1318	LOCUS_13160	sequence1:1361920..1368192(-)	partial			WP_011836823.1	GbpC/Spa domain-containing protein	21.5	32.2	34.2
MGA_1319	LOCUS_13170	sequence1:1368218..1369639(-)	partial			WP_002358661.1	LPXTG cell wall anchor domain-containing protein	18.2	81.7	40.0
MGA_1337	LOCUS_13340	sequence1:1391265..1397171(-)	partial			WP_011068088.1	FctA domain-containing protein	51.4	43.1	32.5
MGA_1427	LOCUS_14230	sequence1:1494198..1494698(+)	partial			WP_001197951.1	YehR family lipoprotein	68.7	63.6	34.2
MGA_1438	LOCUS_14330	sequence1:1503337..1505187(-)	partial			WP_011837728.1	YfhO family protein	99.7	71.3	64.2
MGA_1441	LOCUS_14360	sequence1:1508319..1509008(+)	partial			WP_011141042.1	triose-phosphate isomerase	65.9	63.8	30.0
MGA_1470	LOCUS_14650	sequence1:1538796..1539539(-)	internal_stop_codon	1539600..1539602(-)		WP_011837644.1	Rgg/GadR/MutR family transcriptional regulator	94.3	83.3	42.4
MGA_1472	LOCUS_14670	sequence1:1540477..1540995(+)	partial			WP_012028596.1	thiol reductase thioredoxin	65.1	74.5	35.1
MGA_1478	LOCUS_14730	sequence1:1546677..1547672(-)	partial			WP_011837698.1	DUF1700 domain-containing protein	27.8	44.7	54.3
MGA_1489	LOCUS_14840	sequence1:1558141..1558920(+)	partial			WP_002322202.1	hypothetical protein	84.6	38.7	37.8
MGA_1490	LOCUS_14850	sequence1:1558925..1559443(+)	frameshift		1558824,1558833	WP_012775361.1	membrane protein	75.0	23.4	27.2
MGA_1494	LOCUS_14890	sequence1:1562885..1563622(-)	partial			WP_010989677.1	FtsK/SpoIIIE domain-containing protein	71.0	39.5	30.3
MGA_1500	LOCUS_14950	sequence1:1566674..1569544(+)	partial			WP_013399720.1	FIVAR domain-containing protein	91.5	33.6	22.8
MGA_1505	LOCUS_15000	sequence1:1572810..1573118(-)	partial			WP_006268963.1	hypothetical protein	100.0	50.7	99.0
MGA_1534	LOCUS_15290	sequence1:1605269..1605994(+)	internal_stop_codon	1605134..1605136(+)		WP_055164393.1	IS30 family transposase	93.8	71.7	66.2
MGA_1547	LOCUS_15420	sequence1:1615240..1615677(+)	partial			WP_002917849.1	SP_0198 family lipoprotein	71.7	67.9	46.3
MGA_1563	LOCUS_15580	sequence1:1631126..1631671(+)	partial			WP_011963380.1	serine acetyltransferase	62.4	60.9	47.4
MGA_1571	LOCUS_15660	sequence1:1639097..1641646(+)	partial			WP_000671444.1	fibronectin-binding SSURE repeat adhesin PavB	88.1	64.2	55.2
MGA_1580	LOCUS_15750	sequence1:1649897..1650223(+)	internal_stop_codon	1650221..1650223(+)		WP_011836334.1	uridine kinase	95.4	48.6	67.0
MGA_1581	LOCUS_15760	sequence1:1650281..1650544(+)	internal_stop_codon	1650221..1650223(+)		WP_011836334.1	uridine kinase	94.3	38.7	59.8
MGA_1614	LOCUS_16090	sequence1:1671202..1675812(+)	frameshift,internal_stop_codon	1675804..1675806(+),1675798..1675800(+),1675810..1675812(+)	1675836,1675791	WP_011837563.1	Cna B-type domain-containing protein	52.6	49.3	32.9
MGA_1615	LOCUS_16100	sequence1:1675891..1676547(+)	frameshift,internal_stop_codon	1675810..1675812(+)	1675809,1675836	WP_011837563.1	Cna B-type domain-containing protein	84.4	11.8	40.0
MGA_1616	LOCUS_16110	sequence1:1676928..1677278(-)	partial			WP_002902079.1	hypothetical protein	100.0	71.6	44.0
MGA_1624	LOCUS_16190	sequence1:1685432..1685692(+)	partial			WP_002263364.1	zinc-dependent alcohol dehydrogenase family protein	96.5	23.8	72.3
MGA_1627	LOCUS_16220	sequence1:1687429..1687971(+)	frameshift		1687905	WP_003548211.1	beta-glucoside-specific PTS transporter subunit IIABC	87.2	21.7	43.4
MGA_1628	LOCUS_16230	sequence1:1687950..1689281(+)	frameshift		1687911	WP_011254503.1	glucose PTS transporter subunit IIA	99.8	79.1	58.2
MGA_1639	LOCUS_16340	sequence1:1699876..1700604(+)	partial			WP_002262417.1	hypothetical protein	40.9	76.9	73.0
MGA_1750	LOCUS_17450	sequence1:1813613..1814323(+)	frameshift,internal_stop_codon	1813590..1813592(+)	1813433	WP_115283723.1	IS3 family transposase	99.2	52.0	83.8
MGA_1767	LOCUS_17620	sequence1:1829418..1829978(+)	frameshift,internal_stop_codon	1829959..1829961(+),1829371..1829373(+)	1829916,1829142	WP_102777394.1	IS3 family transposase	88.7	43.9	81.2
MGA_1782	LOCUS_17770	sequence1:1848462..1848902(-)	partial			WP_115276001.1	ISL3 family transposase	97.3	34.9	71.2
MGA_1868	LOCUS_18630	sequence1:1942680..1943756(+)	partial			WP_002365949.1	replication initiator protein A	61.2	60.1	28.1
MGA_1870	LOCUS_18650	sequence1:1944029..1944295(+)	partial			WP_001080846.1	helix-turn-helix transcriptional regulator	67.0	41.8	55.9
MGA_1873	LOCUS_18680	sequence1:1945226..1946659(+)	frameshift		1945200,1946620	WP_011836594.1	SEC10/PgrA surface exclusion domain-containing protein	92.5	52.6	27.0
MGA_1879	LOCUS_18740	sequence1:1949133..1950191(+)	frameshift		1950179,1950444,1949131,1949047	WP_011836421.1	antigen I/II family LPXTG-anchored adhesin	95.2	28.2	27.5
MGA_1881	LOCUS_18760	sequence1:1950486..1951094(+)	frameshift		1950490,1951091,1950444	WP_002352221.1	cell surface antigen I/II	98.5	13.1	40.2
MGA_1882	LOCUS_18770	sequence1:1951091..1951522(+)	frameshift		1951091	WP_002352221.1	cell surface antigen I/II	98.6	10.0	36.5
