{ "type": "genome", "identifier": "GCF_900636765.1", "organism": "Neisseria canis", "title": "Neisseria canis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900636765.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3871785", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "493", "species_taxid": "493", "organism_name": "Neisseria canis", "infraspecific_name": "strain=NCTC10296", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/20", "asm_name": "44503_A02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900636765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/636/765/GCF_900636765.1_44503_A02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2569389", "genome_size_ungapped": "2569389", "gc_percent": "49.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900636765.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2481", "protein_coding_gene_count": "2349", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-20", "dateModified": "2018-12-20", "datePublished": "2018-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria canis" ], "sample_taxid": [ "493" ], "sample_host_organism": [ "Dog" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Hamburg" ], "sample_host_location_id": [], "data_size": "0.712 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.1, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2569389", "Number of Sequences": "1", "Longest Sequences (bp)": "2569389", "N50 (bp)": "2569389", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.7", "Number of CDSs": "2397", "Average Protein Length": "304.3", "Coding Ratio (%)": "85.2", "Number of rRNAs": "12", "Number of tRNAs": "58", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neisseria canis", "strain": "strain=NCTC10296", "accession": "GCA_900636765.1", "taxid": 493, "species_taxid": 493, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 852, "total_fragments": 856, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria canis", "strain": "strain=ATCC 14687", "accession": "GCA_002108495.1", "taxid": 493, "species_taxid": 493, "relation_to_type": "type", "validated": true, "ani": 99.9358, "matched_fragments": 787, "total_fragments": 856, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria wadsworthii", "strain": "strain=9715", "accession": "GCA_000227765.1", "taxid": 607711, "species_taxid": 607711, "relation_to_type": "type", "validated": true, "ani": 90.1287, "matched_fragments": 676, "total_fragments": 856, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dumasiana", "strain": "strain=LMG 30012", "accession": "GCA_022870885.1", "taxid": 1931275, "species_taxid": 1931275, "relation_to_type": "type", "validated": true, "ani": 84.5265, "matched_fragments": 379, "total_fragments": 856, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dumasiana", "strain": "strain=93087", "accession": "GCA_002108505.1", 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"type", "validated": true, "ani": 79.8337, "matched_fragments": 359, "total_fragments": 856, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Uruburuella suis", "strain": "strain=1258/02", "accession": "GCA_022870845.1", "taxid": 252130, "species_taxid": 252130, "relation_to_type": "type", "validated": true, "ani": 79.4604, "matched_fragments": 366, "total_fragments": 856, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Uruburuella suis", "strain": "strain=DSM 17474", "accession": "GCA_004341385.1", "taxid": 252130, "species_taxid": 252130, "relation_to_type": "type", "validated": true, "ani": 79.3397, "matched_fragments": 346, "total_fragments": 856, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bergeriella denitrificans", "strain": "strain=NCTC10295", "accession": "GCA_900453875.1", "taxid": 494, "species_taxid": 494, "relation_to_type": "type", "validated": true, "ani": 79.2248, "matched_fragments": 298, 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"below_threshold" }, { "organism_name": "Neisseria elongata subsp. elongata", "strain": "strain=ATCC 25295", "accession": "GCA_900113545.1", "taxid": 214482, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 78.8001, "matched_fragments": 272, "total_fragments": 856, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria meningitidis", "strain": "strain=PartJ-Nmeningitidis-RM8376", "accession": "GCA_022869645.1", "taxid": 487, "species_taxid": 487, "relation_to_type": "type", "validated": true, "ani": 78.7872, "matched_fragments": 242, "total_fragments": 856, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.1, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900636765.1", "gtdb_species": "s__Neisseria canis", "ani": 100.0, "matched_fragments": 852, "total_fragments": 856, "gtdb_taxonomy": 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