{ "type": "genome", "identifier": "GCF_900636885.1", "organism": "Streptococcus urinalis", "title": "Streptococcus urinalis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900636885.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3881064", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "149016", "species_taxid": "149016", "organism_name": "Streptococcus urinalis", "infraspecific_name": "strain=NCTC13766", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/20", "asm_name": "44927_H01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900636885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/636/885/GCF_900636885.1_44927_H01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2144000", "genome_size_ungapped": "2144000", "gc_percent": "34.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900636885.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2241", "protein_coding_gene_count": "2024", "non_coding_gene_count": "92", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-20", "dateModified": "2018-12-20", "datePublished": "2018-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus urinalis" ], "sample_taxid": [ "149016" ], "sample_host_organism": [ "Human (Female)" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [ "USA: Michigan (State)" ], "sample_host_location_id": [], "data_size": "0.595 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2144000", "Number of Sequences": "1", "Longest Sequences (bp)": "2144000", "N50 (bp)": "2144000", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.3", "Number of CDSs": "2201", "Average Protein Length": "289.0", "Coding Ratio (%)": "89.0", "Number of rRNAs": "18", "Number of tRNAs": "70", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus urinalis", "strain": "strain=NCTC13766", "accession": "GCA_900636885.1", "taxid": 149016, "species_taxid": 149016, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 712, "total_fragments": 714, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus urinalis", "strain": "strain=2285-97", "accession": "GCA_000188055.3", "taxid": 149016, "species_taxid": 149016, "relation_to_type": "type", "validated": true, "ani": 99.9963, "matched_fragments": 706, "total_fragments": 714, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus canis", "strain": "strain=NCTC12191", "accession": "GCA_900636575.1", "taxid": 1329, "species_taxid": 1329, "relation_to_type": "type", "validated": true, "ani": 82.2358, "matched_fragments": 160, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus dysgalactiae", "strain": "strain=FDAARGOS_1157", "accession": "GCA_016724885.1", "taxid": 1334, "species_taxid": 1334, "relation_to_type": "type", "validated": true, "ani": 81.7118, "matched_fragments": 150, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius", "strain": "strain=FDAARGOS_1019", "accession": "GCA_016127275.1", "taxid": 102684, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 80.3506, "matched_fragments": 138, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius", "strain": "strain=NCTC13760", "accession": "GCA_900459445.1", "taxid": 102684, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 80.279, "matched_fragments": 139, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=NCTC13774", "accession": "GCA_900475675.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 80.2764, "matched_fragments": 123, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parauberis", "strain": "strain=NCFD 2020", "accession": "GCA_000187935.2", "taxid": 1348, "species_taxid": 1348, "relation_to_type": "type", "validated": true, "ani": 79.7189, "matched_fragments": 173, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus anginosus", "strain": "strain=NCTC10713", "accession": "GCA_900636475.1", "taxid": 1328, "species_taxid": 1328, "relation_to_type": "type", "validated": true, "ani": 79.6916, "matched_fragments": 84, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius subsp. infantarius", "strain": "strain=ATCC BAA-102", "accession": "GCA_000154985.1", "taxid": 150054, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 79.4906, "matched_fragments": 137, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus bovimastitidis", "strain": "strain=NZ1587", "accession": "GCA_001885095.1", "taxid": 1856638, "species_taxid": 1856638, "relation_to_type": "type", "validated": true, "ani": 78.8179, "matched_fragments": 156, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus penaeicida", "strain": "strain=CAIM 1838", "accession": "GCA_002887775.1", "taxid": 1765960, "species_taxid": 1765960, "relation_to_type": "type", "validated": true, "ani": 78.7385, "matched_fragments": 158, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus halichoeri", "strain": "strain=CCUG48324", "accession": "GCA_009870755.1", "taxid": 254785, "species_taxid": 254785, "relation_to_type": "type", "validated": true, "ani": 78.5292, "matched_fragments": 94, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus troglodytae", "strain": "strain=TKU 31", "accession": "GCA_002355215.1", "taxid": 1111760, "species_taxid": 1111760, "relation_to_type": "type", "validated": true, "ani": 78.4735, "matched_fragments": 108, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus orisratti", "strain": "strain=DSM 15617", "accession": "GCA_000380105.1", "taxid": 114652, "species_taxid": 114652, "relation_to_type": "type", "validated": true, "ani": 78.4404, "matched_fragments": 116, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mutans", "strain": "strain=NCTC10449", "accession": "GCA_900475095.1", "taxid": 1309, "species_taxid": 1309, "relation_to_type": "type", "validated": true, "ani": 78.3556, "matched_fragments": 119, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus zalophi", "strain": "strain=CSL7508", "accession": "GCA_016481285.1", "taxid": 640031, "species_taxid": 640031, "relation_to_type": "type", "validated": true, "ani": 78.3303, "matched_fragments": 99, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus marimammalium", "strain": "strain=DSM 18627", "accession": "GCA_000380045.1", "taxid": 269666, "species_taxid": 269666, "relation_to_type": "type", "validated": true, "ani": 78.089, "matched_fragments": 103, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mutans", "strain": "strain=DSM 20523", "accession": "GCA_000375505.1", "taxid": 1309, "species_taxid": 1309, "relation_to_type": "type", "validated": true, "ani": 77.4761, "matched_fragments": 114, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000188055.2", "gtdb_species": "s__Streptococcus urinalis", "ani": 99.9963, "matched_fragments": 706, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_900636575.1", "gtdb_species": "s__Streptococcus canis", "ani": 82.224, "matched_fragments": 160, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.95", "min_intra_species_ani": "97.68", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCF_900459225.1", "gtdb_species": "s__Streptococcus dysgalactiae", "ani": 81.7227, "matched_fragments": 152, "total_fragments": 714, "gtdb_taxonomy": 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