{ "type": "genome", "identifier": "GCF_900637005.1", "organism": "Yersinia enterocolitica subsp. palearctica", "title": "Yersinia enterocolitica subsp. palearctica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900637005.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3936789", "wgs_master": "na", "refseq_category": "na", "taxid": "150053", "species_taxid": "630", "organism_name": "Yersinia enterocolitica subsp. palearctica", "infraspecific_name": "strain=NCTC13769", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/20", "asm_name": "46582_C01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900637005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/637/005/GCF_900637005.1_46582_C01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4560086", "genome_size_ungapped": "4560086", "gc_percent": "47.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-13", "total_gene_count": "4153", "protein_coding_gene_count": "3856", "non_coding_gene_count": "105", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-20", "dateModified": "2018-12-20", "datePublished": "2018-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Yersinia enterocolitica subsp. palearctica" ], "sample_taxid": [ "150053" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Munich" ], "sample_host_location_id": [], "data_size": "1.295 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4560086", "Number of Sequences": "1", "Longest Sequences (bp)": "4560086", "N50 (bp)": "4560086", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.0", "Number of CDSs": "4076", "Average Protein Length": "313.3", "Coding Ratio (%)": "84.0", "Number of rRNAs": "22", "Number of tRNAs": "73", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Yersinia enterocolitica subsp. palearctica", "strain": "strain=NCTC13769", "accession": "GCA_900637005.1", "taxid": 150053, "species_taxid": 630, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1518, "total_fragments": 1520, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Yersinia enterocolitica subsp. palearctica", "strain": "strain=Y11", "accession": "GCA_000253175.1", "taxid": 150053, "species_taxid": 630, "relation_to_type": "type", "validated": true, "ani": 99.9892, "matched_fragments": 1513, "total_fragments": 1520, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Yersinia enterocolitica subsp. enterocolitica", "strain": "strain=NBRC 105693", "accession": "GCA_001598735.1", "taxid": 150052, "species_taxid": 630, "relation_to_type": "type", "validated": true, "ani": 96.8524, "matched_fragments": 1298, "total_fragments": 1520, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Yersinia enterocolitica subsp. enterocolitica", "strain": "strain=NCTC12982", "accession": "GCA_901472495.1", "taxid": 150052, "species_taxid": 630, "relation_to_type": "type", 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"total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia aldovae", "strain": "strain=IP06005", "accession": "GCA_001091225.1", "taxid": 29483, "species_taxid": 29483, "relation_to_type": "type", "validated": true, "ani": 85.6192, "matched_fragments": 1055, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia alsatica", "strain": "strain=IP38850", "accession": "GCA_902170305.1", "taxid": 2890317, "species_taxid": 2890317, "relation_to_type": "type", "validated": true, "ani": 85.5403, "matched_fragments": 1197, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia entomophila", "strain": "strain=A1", "accession": "GCA_021462285.1", "taxid": 42906, "species_taxid": 42906, "relation_to_type": "type", "validated": true, "ani": 79.7327, "matched_fragments": 404, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hafnia paralvei", "strain": "strain=ATCC 29927", "accession": "GCA_023698525.1", "taxid": 546367, "species_taxid": 546367, "relation_to_type": "type", "validated": true, "ani": 79.0462, "matched_fragments": 310, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia nevei", "strain": "strain=S15", "accession": "GCA_008364245.1", "taxid": 2703794, "species_taxid": 2703794, "relation_to_type": "type", "validated": true, "ani": 78.9978, "matched_fragments": 399, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia bockelmannii", "strain": "strain=S3", "accession": "GCA_008011855.1", "taxid": 2703793, "species_taxid": 2703793, "relation_to_type": "type", "validated": true, "ani": 78.9316, "matched_fragments": 392, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, 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