{ "type": "genome", "identifier": "GCF_900637025.1", "organism": "Streptococcus oralis ATCC 35037", "title": "Streptococcus oralis ATCC 35037", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900637025.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3936797", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "655813", "species_taxid": "1303", "organism_name": "Streptococcus oralis ATCC 35037", "infraspecific_name": "strain=NCTC 11427", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/20", "asm_name": "46338_H01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900637025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/637/025/GCF_900637025.1_46338_H01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1931548", "genome_size_ungapped": "1931548", "gc_percent": "41.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900637025.1-RS_2024_03_17", "annotation_date": "2024-03-17", "total_gene_count": "1868", "protein_coding_gene_count": "1778", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-20", "dateModified": "2018-12-20", "datePublished": "2018-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus oralis ATCC 35037" ], "sample_taxid": [ "655813" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.544 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1931548", "Number of Sequences": "1", "Longest Sequences (bp)": "1931548", "N50 (bp)": "1931548", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.5", "Number of CDSs": "1789", "Average Protein Length": "320.1", "Coding Ratio (%)": "88.9", "Number of rRNAs": "12", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus oralis", "strain": "strain=NCTC11427", "accession": "GCA_900637025.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 642, "total_fragments": 643, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus oralis", "strain": "strain=FDAARGOS_1020", "accession": "GCA_016127555.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 99.9992, "matched_fragments": 641, "total_fragments": 643, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus oralis", "strain": "strain=CCUG 13229", "accession": "GCA_002014885.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 99.9906, "matched_fragments": 630, "total_fragments": 643, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus oralis", "strain": "strain=ATCC 35037", "accession": "GCA_000164095.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 99.9765, "matched_fragments": 630, "total_fragments": 643, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus oralis", "strain": "strain=CCUG 24891", "accession": "GCA_001639375.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 99.9743, "matched_fragments": 628, "total_fragments": 643, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus oralis", "strain": "strain=ATCC 35037", "accession": "GCA_000148565.2", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 99.9389, "matched_fragments": 614, "total_fragments": 643, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 92.3762, "matched_fragments": 525, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 87.1428, "matched_fragments": 464, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 87.0157, "matched_fragments": 464, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 79.3786, "matched_fragments": 106, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2995, "matched_fragments": 116, "total_fragments": 643, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900637025.1", "gtdb_species": "s__Streptococcus oralis", "ani": 100.0, "matched_fragments": 641, "total_fragments": 643, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.04", "min_intra_species_ani": "95.11", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.80", "num_clustered_genomes": 39, "status": "conclusive" }, { "accession": "GCA_905371745.1", "gtdb_species": "s__Streptococcus sp905371745", "ani": 94.939, "matched_fragments": 456, "total_fragments": 643, "gtdb_taxonomy": 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