{ "type": "genome", "identifier": "GCF_900637075.1", "organism": "Streptococcus pseudoporcinus", "title": "Streptococcus pseudoporcinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900637075.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4030748", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "361101", "species_taxid": "361101", "organism_name": "Streptococcus pseudoporcinus", "infraspecific_name": "strain=NCTC13786", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/20", "asm_name": "48128_D02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900637075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/637/075/GCF_900637075.1_48128_D02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2156061", "genome_size_ungapped": "2156061", "gc_percent": "37.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900637075.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2097", "protein_coding_gene_count": "1939", "non_coding_gene_count": "89", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-20", "dateModified": "2018-12-20", "datePublished": "2018-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus pseudoporcinus" ], "sample_taxid": [ "361101" ], "sample_host_organism": [ "Human (Female)" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Montreal" ], "sample_host_location_id": [], "data_size": "0.606 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2156061", "Number of Sequences": "1", "Longest Sequences (bp)": "2156061", "N50 (bp)": "2156061", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.1", "Number of CDSs": "2002", "Average Protein Length": "312.1", "Coding Ratio (%)": "86.9", "Number of rRNAs": "18", "Number of tRNAs": "67", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus pseudoporcinus", "strain": "strain=NCTC13786", "accession": "GCA_900637075.1", "taxid": 361101, "species_taxid": 361101, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 714, "total_fragments": 718, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus pseudoporcinus", "strain": "strain=LQ 940-04", "accession": "GCA_000188035.3", "taxid": 361101, "species_taxid": 361101, "relation_to_type": "type", "validated": true, "ani": 99.9963, "matched_fragments": 704, "total_fragments": 718, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus porcinus", "strain": "strain=NCTC10999", "accession": "GCA_900475415.1", "taxid": 1340, "species_taxid": 1340, "relation_to_type": "type", "validated": true, "ani": 88.9225, "matched_fragments": 582, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus bovimastitidis", "strain": "strain=NZ1587", "accession": "GCA_001885095.1", "taxid": 1856638, "species_taxid": 1856638, "relation_to_type": "type", "validated": true, "ani": 80.313, "matched_fragments": 336, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 80.0717, "matched_fragments": 72, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus penaeicida", "strain": "strain=CAIM 1838", "accession": "GCA_002887775.1", "taxid": 1765960, "species_taxid": 1765960, "relation_to_type": "type", "validated": true, "ani": 80.0685, "matched_fragments": 330, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus uberis", "strain": "strain=NCTC3858", "accession": "GCA_900475595.1", "taxid": 1349, "species_taxid": 1349, "relation_to_type": "type", "validated": true, "ani": 80.0436, "matched_fragments": 242, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus didelphis", "strain": "strain=DSM 15616", "accession": "GCA_000380005.1", "taxid": 102886, "species_taxid": 102886, "relation_to_type": "type", "validated": true, "ani": 79.2892, "matched_fragments": 194, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parauberis", "strain": "strain=NCFD 2020", "accession": "GCA_000187935.2", "taxid": 1348, "species_taxid": 1348, "relation_to_type": "type", "validated": true, "ani": 79.1787, "matched_fragments": 223, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equi", "strain": "strain=ATCC 33398", "accession": "GCA_900156215.1", "taxid": 1336, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 78.8563, "matched_fragments": 131, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus hillyeri", "strain": "strain=28462", "accession": "GCA_003686955.1", "taxid": 2282420, "species_taxid": 2282420, "relation_to_type": "type", "validated": true, "ani": 78.2711, "matched_fragments": 100, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000188035.1", "gtdb_species": "s__Streptococcus pseudoporcinus", "ani": 99.9961, "matched_fragments": 705, "total_fragments": 718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.36", "min_intra_species_ani": "97.79", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCF_900475415.1", "gtdb_species": "s__Streptococcus porcinus", "ani": 88.9401, "matched_fragments": 583, "total_fragments": 718, "gtdb_taxonomy": 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