{ "type": "genome", "identifier": "GCF_900637265.1", "organism": "Achromobacter insolitus", "title": "Achromobacter insolitus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900637265.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4384063", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "217204", "species_taxid": "217204", "organism_name": "Achromobacter insolitus", "infraspecific_name": "strain=NCTC13520", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/20", "asm_name": "50432_C01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900637265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/637/265/GCF_900637265.1_50432_C01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6472476", "genome_size_ungapped": "6472476", "gc_percent": "65.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900637265.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "5955", "protein_coding_gene_count": "5863", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-20", "dateModified": "2018-12-20", "datePublished": "2018-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Achromobacter insolitus" ], "sample_taxid": [ "217204" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.784 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6472476", "Number of Sequences": "1", "Longest Sequences (bp)": "6472476", "N50 (bp)": "6472476", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.1", "Number of CDSs": "5918", "Average Protein Length": "331.8", "Coding Ratio (%)": "91.0", "Number of rRNAs": "13", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Achromobacter insolitus", "strain": "strain=NCTC13520", "accession": "GCA_900637265.1", "taxid": 217204, "species_taxid": 217204, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2157, "total_fragments": 2157, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter insolitus", "strain": "strain=LMG 6003", "accession": "GCA_902859615.1", "taxid": 217204, "species_taxid": 217204, "relation_to_type": "type", "validated": true, "ani": 99.9926, "matched_fragments": 2122, "total_fragments": 2157, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter insolitus", "strain": "strain=LMG 6003", "accession": "GCA_002209555.1", "taxid": 217204, "species_taxid": 217204, "relation_to_type": "type", "validated": true, "ani": 99.9917, "matched_fragments": 2133, "total_fragments": 2157, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter insolitus", "strain": "strain=DSM 23807", "accession": "GCA_001971645.1", "taxid": 217204, "species_taxid": 217204, "relation_to_type": "type", "validated": true, "ani": 99.9886, "matched_fragments": 2156, "total_fragments": 2157, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter insolitus", "strain": "strain=NCTC 13520", "accession": "GCA_024168865.1", "taxid": 217204, "species_taxid": 217204, "relation_to_type": "type", "validated": true, "ani": 98.9962, "matched_fragments": 2057, "total_fragments": 2157, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=PartM-Axylosoxidans-RM8376", "accession": "GCA_022870085.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 85.1712, "matched_fragments": 1454, "total_fragments": 2157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=CCUG 219", "accession": "GCA_021391275.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 81.8026, "matched_fragments": 867, "total_fragments": 2157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eoetvoesia caeni", "strain": "strain=PB3-7B", "accession": "GCA_022688825.1", "taxid": 645616, "species_taxid": 645616, "relation_to_type": "type", "validated": true, "ani": 77.7073, "matched_fragments": 313, "total_fragments": 2157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum lusitanum", "strain": "strain=P6-12", "accession": "GCA_000256565.1", "taxid": 213312, "species_taxid": 213312, "relation_to_type": "type", "validated": true, "ani": 77.081, "matched_fragments": 272, "total_fragments": 2157, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002209555.1", "gtdb_species": "s__Achromobacter insolitus", "ani": 99.9917, "matched_fragments": 2133, "total_fragments": 2157, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.13", "min_intra_species_ani": "98.86", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.89", "num_clustered_genomes": 17, "status": "conclusive" }, { "accession": "GCF_002192695.1", "gtdb_species": "s__Achromobacter xylosoxidans_C", "ani": 90.1068, "matched_fragments": 1818, "total_fragments": 2157, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.40", "min_intra_species_ani": "98.40", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014490035.1", "gtdb_species": "s__Achromobacter bronchisepticus_A", "ani": 90.044, "matched_fragments": 1821, "total_fragments": 2157, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0106, 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"mean_intra_species_ani": "96.34", "min_intra_species_ani": "96.34", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_903652925.1", "gtdb_species": "s__Achromobacter anxifer", "ani": 89.3287, "matched_fragments": 1784, "total_fragments": 2157, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "99.16", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002885955.2", "gtdb_species": "s__Achromobacter pulmonis_A", "ani": 86.2332, "matched_fragments": 1491, "total_fragments": 2157, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "98.79", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.0, "doubling_h": null, "growth_tmp": 33.0, "optimum_tmp": 29.833, "optimum_ph": null, "genome_size": 6592783.5, "gc_content": 65.009, "coding_genes": 5853.0, "rRNA16S_genes": 4.0, "tRNA_genes": 57.5, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.75, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Achromobacter", "insolitus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }