{ "type": "genome", "identifier": "GCF_900637295.1", "organism": "Actinomyces slackii", "title": "Actinomyces slackii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900637295.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4412657", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "52774", "species_taxid": "52774", "organism_name": "Actinomyces slackii", "infraspecific_name": "strain=NCTC11923", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/20", "asm_name": "50477_G01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900637295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/637/295/GCF_900637295.1_50477_G01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3220508", "genome_size_ungapped": "3220508", "gc_percent": "70.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900637295.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2683", "protein_coding_gene_count": "2592", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-20", "dateModified": "2018-12-20", "datePublished": "2018-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomyces slackii" ], "sample_taxid": [ "52774" ], "sample_host_organism": [ "Bovine (Dairy Cow)" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.866 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3220508", "Number of Sequences": "1", "Longest Sequences (bp)": "3220508", "N50 (bp)": "3220508", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.0", "Number of CDSs": "2692", "Average Protein Length": "353.0", "Coding Ratio (%)": "88.5", "Number of rRNAs": "9", "Number of tRNAs": "57", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomyces slackii", "strain": "strain=NCTC11923", "accession": "GCA_900637295.1", "taxid": 52774, "species_taxid": 52774, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1073, "total_fragments": 1073, "ani_threshold": 95, "status": "conclusive" }, { 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"status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.252, "cell_length": -0.097, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 36.833, "optimum_ph": 7.0, "genome_size": 3168639.5, "gc_content": 70.1, "coding_genes": 2308.7, "rRNA16S_genes": 3.0, "tRNA_genes": 49.8, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.2, "anaerobic_respiration": 0.428, "aerobic_respiration": 0.371, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.95, "coccus_cell_shape": 0.05, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Actinomyces", "slackii" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }