{ "type": "genome", "identifier": "GCF_900637475.1", "organism": "Yersinia pseudotuberculosis", "title": "Yersinia pseudotuberculosis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900637475.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4442458", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "633", "species_taxid": "633", "organism_name": "Yersinia pseudotuberculosis", "infraspecific_name": "strain=NCTC10275", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/20", "asm_name": "51108_B01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900637475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/637/475/GCF_900637475.1_51108_B01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4610200", "genome_size_ungapped": "4610200", "gc_percent": "47.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900637475.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "4094", "protein_coding_gene_count": "3836", "non_coding_gene_count": "114", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-20", "dateModified": "2018-12-20", "datePublished": "2018-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Yersinia pseudotuberculosis" ], "sample_taxid": [ "633" ], "sample_host_organism": [ "Bird (Turkey)" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.308 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4610200", "Number of Sequences": "1", "Longest Sequences (bp)": "4610200", "N50 (bp)": "4610200", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.5", "Number of CDSs": "3913", "Average Protein Length": "324.5", "Coding Ratio (%)": "82.6", "Number of rRNAs": "22", "Number of tRNAs": "81", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Yersinia pseudotuberculosis", "strain": "strain=NCTC10275", "accession": "GCA_900637475.1", "taxid": 633, "species_taxid": 633, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1536, "total_fragments": 1536, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Yersinia similis", "strain": "strain=228", "accession": "GCA_000582515.1", "taxid": 367190, "species_taxid": 367190, "relation_to_type": "type", "validated": true, "ani": 94.9131, "matched_fragments": 1396, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia similis", "strain": "strain=Y228", "accession": "GCA_001053095.1", "taxid": 367190, "species_taxid": 367190, "relation_to_type": "type", "validated": true, "ani": 94.8958, "matched_fragments": 1356, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia intermedia", "strain": "strain=NCTC11469", "accession": "GCA_900635455.1", "taxid": 631, "species_taxid": 631, "relation_to_type": "type", "validated": true, "ani": 82.915, "matched_fragments": 907, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia rochesterensis", "strain": "strain=ATCC BAA-2637", "accession": "GCA_003600645.1", "taxid": 1604335, "species_taxid": 1604335, "relation_to_type": "type", "validated": true, "ani": 82.7358, "matched_fragments": 885, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia intermedia", "strain": "strain=ATCC 29909", "accession": "GCA_000168035.1", "taxid": 631, "species_taxid": 631, "relation_to_type": "type", "validated": true, "ani": 82.7006, "matched_fragments": 880, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia frederiksenii", "strain": "strain=ATCC 33641", "accession": "GCA_000168015.1", "taxid": 29484, "species_taxid": 29484, "relation_to_type": "suspected-type", "validated": true, "ani": 82.6194, "matched_fragments": 889, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia alsatica", "strain": "strain=IP38850", "accession": "GCA_902170305.1", "taxid": 2890317, "species_taxid": 2890317, "relation_to_type": "type", "validated": true, "ani": 82.6117, "matched_fragments": 930, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia thracica", "strain": "strain=IP34646", "accession": "GCA_902170565.1", "taxid": 2890319, "species_taxid": 2890319, "relation_to_type": "type", "validated": true, "ani": 82.5973, "matched_fragments": 881, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia vastinensis", "strain": "strain=IP38594", "accession": "GCA_902726565.1", "taxid": 2890318, "species_taxid": 2890318, "relation_to_type": "type", "validated": true, "ani": 82.5756, "matched_fragments": 848, "total_fragments": 1536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia aldovae", "strain": "strain=IP06005", "accession": "GCA_001091225.1", "taxid": 29483, "species_taxid": 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