{ "type": "genome", "identifier": "GCF_900637545.1", "organism": "Aeromonas encheleia", "title": "Aeromonas encheleia", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900637545.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4475689", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "73010", "species_taxid": "73010", "organism_name": "Aeromonas encheleia", "infraspecific_name": "strain=NCTC12917", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/20", "asm_name": "51438_G01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900637545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/637/545/GCF_900637545.1_51438_G01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4542521", "genome_size_ungapped": "4542521", "gc_percent": "62.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900637545.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "4231", "protein_coding_gene_count": "4029", "non_coding_gene_count": "164", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-20", "dateModified": "2018-12-20", "datePublished": "2018-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Aeromonas encheleia" ], "sample_taxid": [ "73010" ], "sample_host_organism": [ "Fish (European Eel)" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Valencia" ], "sample_host_location_id": [], "data_size": "1.261 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.1, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4542521", "Number of Sequences": "1", "Longest Sequences (bp)": "4542521", "N50 (bp)": "4542521", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.9", "Number of CDSs": "4085", "Average Protein Length": "319.0", "Coding Ratio (%)": "86.1", "Number of rRNAs": "31", "Number of tRNAs": "130", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aeromonas encheleia", "strain": "strain=NCTC12917", "accession": "GCA_900637545.1", "taxid": 73010, "species_taxid": 73010, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1511, "total_fragments": 1514, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aeromonas encheleia", "strain": "strain=CECT 4342", "accession": "GCA_000819825.1", "taxid": 73010, "species_taxid": 73010, "relation_to_type": "type", "validated": true, "ani": 99.9784, "matched_fragments": 1473, "total_fragments": 1514, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aeromonas aquatica", "strain": "strain=AE235", "accession": "GCA_000764655.1", "taxid": 558964, "species_taxid": 558964, "relation_to_type": "type", "validated": true, "ani": 91.4503, "matched_fragments": 1253, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas eucrenophila", "strain": "strain=CECT 4224", "accession": "GCA_000819865.1", "taxid": 649, "species_taxid": 649, "relation_to_type": "type", "validated": true, "ani": 90.0365, "matched_fragments": 1301, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas tecta", "strain": "strain=CECT 7082", "accession": "GCA_000820185.2", "taxid": 324617, "species_taxid": 324617, "relation_to_type": "type", "validated": true, "ani": 89.7201, "matched_fragments": 1318, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas media", "strain": "strain=CECT 4232", "accession": "GCA_000819985.1", "taxid": 651, "species_taxid": 651, "relation_to_type": "type", "validated": true, "ani": 89.6329, "matched_fragments": 1170, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas media", "strain": "strain=ATCC 33907", "accession": "GCA_018359985.1", "taxid": 651, "species_taxid": 651, "relation_to_type": "type", "validated": true, "ani": 89.6319, "matched_fragments": 1191, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas lusitana", "strain": "strain=MDC 2473", "accession": "GCA_002812985.1", "taxid": 931529, 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"matched_fragments": 210, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 76.3663, "matched_fragments": 114, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella insulae", "strain": "strain=JBTF-M18", "accession": "GCA_009831655.1", "taxid": 2681496, "species_taxid": 2681496, "relation_to_type": "type", "validated": true, "ani": 76.2604, "matched_fragments": 130, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, "species_taxid": 2607506, "relation_to_type": "type", "validated": true, "ani": 76.1453, "matched_fragments": 130, "total_fragments": 1514, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.1, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900637545.1", "gtdb_species": "s__Aeromonas encheleia", "ani": 100.0, "matched_fragments": 1512, "total_fragments": 1514, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "97.80", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_000764655.1", "gtdb_species": "s__Aeromonas aquatica", "ani": 91.4401, "matched_fragments": 1254, "total_fragments": 1514, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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