{ "type": "genome", "identifier": "GCF_900637575.1", "organism": "Slackia heliotrinireducens", "title": "Slackia heliotrinireducens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900637575.1", "bioproject": "PRJNA224116", "biosample": "SAMEA44527918", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "84110", "species_taxid": "84110", "organism_name": "Slackia heliotrinireducens", "infraspecific_name": "strain=NCTC11029", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/20", "asm_name": "52006_A02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900637575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/637/575/GCF_900637575.1_52006_A02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3166158", "genome_size_ungapped": "3166158", "gc_percent": "60.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900637575.1-RS_2024_03_24", "annotation_date": "2024-03-24", "total_gene_count": "2818", "protein_coding_gene_count": "2748", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-20", "dateModified": "2018-12-20", "datePublished": "2018-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Slackia heliotrinireducens" ], "sample_taxid": [ "84110" ], "sample_host_organism": [ "Sheep" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [ "Australia" ], "sample_host_location_id": [], "data_size": "0.888 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3166158", "Number of Sequences": "1", "Longest Sequences (bp)": "3166158", "N50 (bp)": "3166158", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.2", "Number of CDSs": "2804", "Average Protein Length": "326.3", "Coding Ratio (%)": "86.7", "Number of rRNAs": "6", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Slackia heliotrinireducens", "strain": "strain=NCTC11029", "accession": "GCA_900637575.1", "taxid": 84110, "species_taxid": 84110, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1055, "total_fragments": 1055, "ani_threshold": 95, 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"strain": "strain=ATCC 700122", "accession": "GCA_000162875.1", "taxid": 84109, "species_taxid": 84109, "relation_to_type": "type", "validated": true, "ani": 78.4315, "matched_fragments": 165, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia equolifaciens", "strain": "strain=DSM 24851", "accession": "GCA_003725995.1", "taxid": 498718, "species_taxid": 498718, "relation_to_type": "type", "validated": true, "ani": 78.0882, "matched_fragments": 171, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia hattorii", "strain": "strain=8CFCBH1", "accession": "GCA_011405655.1", "taxid": 2707299, "species_taxid": 2707299, "relation_to_type": "type", "validated": true, "ani": 77.9147, "matched_fragments": 169, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella timonensis", "strain": "strain=Marseille-P3135", "accession": "GCA_900184265.1", "taxid": 1871008, "species_taxid": 1871008, "relation_to_type": "type", "validated": true, "ani": 77.8414, "matched_fragments": 210, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia isoflavoniconvertens", "strain": "strain=DSM 22006", "accession": "GCA_014192995.1", "taxid": 572010, "species_taxid": 572010, "relation_to_type": "type", "validated": true, "ani": 77.7972, "matched_fragments": 124, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia equolifaciens subsp. celatus", "strain": "strain=DSM 18785", "accession": "GCA_003726015.1", "taxid": 394340, "species_taxid": 446660, "relation_to_type": "type", "validated": true, "ani": 77.784, "matched_fragments": 165, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia piriformis", "strain": "strain=YIT 12062", "accession": "GCA_000296445.1", "taxid": 626934, "species_taxid": 626934, "relation_to_type": "type", "validated": true, "ani": 77.7337, "matched_fragments": 132, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia muris", "strain": "strain=DSM 29508", "accession": "GCA_008831045.1", "taxid": 1796610, "species_taxid": 1796610, "relation_to_type": "type", "validated": true, "ani": 77.6368, "matched_fragments": 168, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonibacter pamelaeae", "strain": "strain=7-10-1-bT", "accession": "GCA_000210055.1", "taxid": 471189, "species_taxid": 471189, "relation_to_type": "type", "validated": true, "ani": 77.5995, "matched_fragments": 202, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=UCSF2243", "accession": "GCA_003339945.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", 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1053, "total_fragments": 1055, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_003725295.1", "gtdb_species": "s__Slackia_A faecicanis", "ani": 78.4804, "matched_fragments": 183, "total_fragments": 1055, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000162875.1", "gtdb_species": "s__Slackia exigua", "ani": 78.4082, "matched_fragments": 166, "total_fragments": 1055, 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