{ "type": "genome", "identifier": "GCF_900637585.1", "organism": "Legionella pneumophila subsp. pascullei", "title": "Legionella pneumophila subsp. pascullei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900637585.1", "bioproject": "PRJNA224116", "biosample": "SAMEA44537668", "wgs_master": "na", "refseq_category": "na", "taxid": "91890", "species_taxid": "446", "organism_name": "Legionella pneumophila subsp. pascullei", "infraspecific_name": "strain=NCTC12273", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/20", "asm_name": "52067_F01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900637585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/637/585/GCF_900637585.1_52067_F01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3458917", "genome_size_ungapped": "3458917", "gc_percent": "38.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-13", "total_gene_count": "3099", "protein_coding_gene_count": "3015", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-20", "dateModified": "2018-12-20", "datePublished": "2018-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella pneumophila subsp. pascullei" ], "sample_taxid": [ "91890" ], "sample_host_organism": [ "environmental" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.976 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3458917", "Number of Sequences": "1", "Longest Sequences (bp)": "3458917", "N50 (bp)": "3458917", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.2", "Number of CDSs": "3029", "Average Protein Length": "334.1", "Coding Ratio (%)": "87.8", "Number of rRNAs": "9", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella pneumophila subsp. pascullei", "strain": "strain=NCTC12273", "accession": "GCA_900637585.1", "taxid": 91890, "species_taxid": 446, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1151, "total_fragments": 1152, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella pneumophila subsp. pascullei", "strain": "strain=ATCC 33737", "accession": "GCA_000586255.1", "taxid": 91890, "species_taxid": 446, "relation_to_type": "type", "validated": true, "ani": 99.9713, "matched_fragments": 1141, "total_fragments": 1152, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella pneumophila subsp. fraseri", "strain": "strain=Los Angeles 1", "accession": "GCA_900639965.1", "taxid": 91892, "species_taxid": 446, "relation_to_type": "type", "validated": true, "ani": 93.8543, "matched_fragments": 1018, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella pneumophila subsp. fraseri", "strain": "strain=ATCC 33156", "accession": "GCA_000586315.1", "taxid": 91892, "species_taxid": 446, "relation_to_type": "type", "validated": true, "ani": 93.8165, "matched_fragments": 1014, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella pneumophila", "strain": "strain=NCTC11192", "accession": "GCA_900452735.1", "taxid": 446, "species_taxid": 446, "relation_to_type": "type", "validated": true, "ani": 91.2766, "matched_fragments": 1006, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella pneumophila", "strain": "strain=FDAARGOS_779", "accession": "GCA_006364635.1", "taxid": 446, "species_taxid": 446, "relation_to_type": "type", "validated": true, "ani": 91.2739, "matched_fragments": 1007, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella pneumophila subsp. pneumophila", "strain": "strain=PartS-Lpneumophila-RM8376", "accession": "GCA_022870105.1", "taxid": 91891, "species_taxid": 446, "relation_to_type": "type", "validated": true, "ani": 91.2411, "matched_fragments": 1003, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella lytica", "strain": "strain=PCM 2298", "accession": "GCA_023921225.1", "taxid": 96232, "species_taxid": 96232, "relation_to_type": "type", "validated": true, "ani": 78.0722, "matched_fragments": 145, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella adelaidensis", "strain": "strain=NCTC12735", "accession": "GCA_900637865.1", "taxid": 45056, "species_taxid": 45056, "relation_to_type": "type", "validated": true, "ani": 77.5897, "matched_fragments": 69, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900637585.1", "gtdb_species": "s__Legionella pascullei", "ani": 100.0, "matched_fragments": 1151, "total_fragments": 1152, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.72", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 8, "status": "conclusive" }, { "accession": "GCA_000586315.1", "gtdb_species": "s__Legionella fraseri", "ani": 93.8165, "matched_fragments": 1014, "total_fragments": 1152, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.50", "min_intra_species_ani": "96.27", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.87", "num_clustered_genomes": 43, "status": "-" }, { "accession": "GCF_000008485.1", "gtdb_species": "s__Legionella pneumophila", "ani": 91.3112, "matched_fragments": 1018, "total_fragments": 1152, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Legionella", "pneumophila", "subsp.", "pascullei" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }