{ "type": "genome", "identifier": "GCF_900637635.1", "organism": "Legionella jordanis", "title": "Legionella jordanis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900637635.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4552886", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "456", "species_taxid": "456", "organism_name": "Legionella jordanis", "infraspecific_name": "strain=NCTC11533", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/20", "asm_name": "52313_A01", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900637635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/637/635/GCF_900637635.1_52313_A01", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3133723", "genome_size_ungapped": "3133723", "gc_percent": "41.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900637635.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2880", "protein_coding_gene_count": "2794", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-20", "dateModified": "2018-12-20", "datePublished": "2018-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella jordanis" ], "sample_taxid": [ "456" ], "sample_host_organism": [ "environmental" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Bloomington, IN" ], "sample_host_location_id": [], "data_size": "0.890 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3133723", "Number of Sequences": "1", "Longest Sequences (bp)": "3133723", "N50 (bp)": "3133723", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.7", "Number of CDSs": "2813", "Average Protein Length": "330.0", "Coding Ratio (%)": "88.9", "Number of rRNAs": "12", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella jordanis", "strain": "strain=NCTC11533", "accession": "GCA_900637635.1", "taxid": 456, "species_taxid": 456, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1042, "total_fragments": 1044, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella jordanis", "strain": "strain=ATCC 33623", "accession": "GCA_001648675.1", "taxid": 456, "species_taxid": 456, "relation_to_type": "type", "validated": true, "ani": 99.9812, "matched_fragments": 1014, "total_fragments": 1044, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella jordanis", "strain": "strain=BL-540", "accession": "GCA_001467765.1", "taxid": 456, "species_taxid": 456, "relation_to_type": "type", "validated": true, "ani": 99.9706, "matched_fragments": 1020, "total_fragments": 1044, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella hackeliae", "strain": "strain=NCTC11979", "accession": "GCA_900452565.1", "taxid": 449, "species_taxid": 449, "relation_to_type": "type", "validated": true, "ani": 79.7285, "matched_fragments": 189, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella hackeliae", "strain": "strain=ATCC35250", "accession": "GCA_000953655.1", "taxid": 449, "species_taxid": 449, "relation_to_type": "type", "validated": true, "ani": 79.7258, "matched_fragments": 192, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella jamestowniensis", "strain": "strain=DSM 19215", "accession": "GCA_900114725.1", "taxid": 455, "species_taxid": 455, "relation_to_type": "type", "validated": true, "ani": 79.0459, "matched_fragments": 194, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella jamestowniensis", "strain": "strain=JA-26-G1-E2", "accession": "GCA_900640205.1", "taxid": 455, "species_taxid": 455, "relation_to_type": "type", "validated": true, "ani": 79.0184, "matched_fragments": 189, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella taurinensis", "strain": "strain=NCTC13314", "accession": "GCA_900452865.1", "taxid": 70611, "species_taxid": 70611, "relation_to_type": "type", "validated": true, "ani": 78.6847, "matched_fragments": 88, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella quateirensis", "strain": "strain=NCTC12376", "accession": "GCA_900452695.1", "taxid": 45072, "species_taxid": 45072, "relation_to_type": "type", "validated": true, "ani": 78.281, "matched_fragments": 83, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella quateirensis", "strain": "strain=ATCC 49507", "accession": "GCA_001467955.1", "taxid": 45072, "species_taxid": 45072, "relation_to_type": "type", "validated": true, "ani": 77.6856, "matched_fragments": 80, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900637635.1", "gtdb_species": "s__Tatlockia jordanis", "ani": 100.0, "matched_fragments": 1042, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.59", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_003989745.1", "gtdb_species": "s__Legionella_A septentrionalis", "ani": 81.4442, "matched_fragments": 89, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.39", "min_intra_species_ani": "99.22", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_016864235.1", "gtdb_species": "s__Legionella_C sp016864235", "ani": 79.7305, "matched_fragments": 109, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000953655.1", "gtdb_species": "s__Tatlockia hackeliae", "ani": 79.6719, "matched_fragments": 192, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002240035.1", "gtdb_species": "s__Tatlockia clemsonensis", "ani": 79.553, "matched_fragments": 191, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900452865.1", "gtdb_species": "s__Legionella_C taurinensis", "ani": 79.0758, "matched_fragments": 90, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.63", "min_intra_species_ani": "99.52", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_001467745.1", "gtdb_species": "s__Tatlockia jamestowniensis", "ani": 78.9283, "matched_fragments": 192, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.71", "min_intra_species_ani": "99.16", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.95", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_016786215.1", "gtdb_species": "s__Legionella sp016786215", "ani": 78.8318, "matched_fragments": 80, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000512355.1", "gtdb_species": "s__Legionella_A oakridgensis", "ani": 78.5961, "matched_fragments": 72, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.51", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001467025.1", "gtdb_species": "s__Tatlockia brunensis", "ani": 78.5641, "matched_fragments": 195, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000621525.1", "gtdb_species": "s__Tatlockia fairfieldensis", "ani": 78.5118, "matched_fragments": 96, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900187355.1", "gtdb_species": "s__Tatlockia lansingensis", "ani": 78.4691, "matched_fragments": 185, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000756815.1", "gtdb_species": "s__Tatlockia massiliensis", "ani": 78.4195, "matched_fragments": 103, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001467625.1", "gtdb_species": "s__Tatlockia feeleii", "ani": 77.813, "matched_fragments": 129, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "98.18", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_900640175.1", "gtdb_species": "s__Tatlockia sp900640175", "ani": 77.8106, "matched_fragments": 129, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001467955.1", "gtdb_species": "s__Legionella quateirensis", "ani": 77.6745, "matched_fragments": 81, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_013697725.1", "gtdb_species": "s__Tatlockia sp013697725", "ani": 77.489, "matched_fragments": 71, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.324, "cell_length": 0.259, "doubling_h": 0.38, "growth_tmp": 37.0, "optimum_tmp": 33.77, "optimum_ph": 6.9, "genome_size": 3086185.0, "gc_content": 38.268, "coding_genes": 2803.262, "rRNA16S_genes": 3.5, "tRNA_genes": 42.766, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.888, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Legionella", "jordanis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }