# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_66	LOCUS_00660	sequence1:73396..73821(+)	partial			WP_010989330.1	type VII secretion protein EssC	56.0	5.3	94.9
MGA_74	LOCUS_00740	sequence1:78531..80051(+)	partial			WP_010989340.1	LXG domain-containing protein	74.1	73.6	74.9
MGA_78	LOCUS_00780	sequence1:83429..85207(+)	partial			WP_010989682.1	hypothetical protein	46.6	54.5	39.3
MGA_94	LOCUS_00940	sequence1:100258..101658(+)	partial			WP_146623251.1	beta-glucoside-specific PTS transporter subunit IIABC	95.7	71.6	43.8
MGA_101	LOCUS_01010	sequence1:107618..107851(+)	partial			WP_010989514.1	DUF916 and DUF3324 domain-containing protein	66.2	14.9	60.8
MGA_135	LOCUS_01350	sequence1:143365..144144(+)	partial			WP_034349500.1	serine hydrolase	73.7	72.5	29.9
MGA_241	LOCUS_02370	sequence1:276346..276846(+)	partial			WP_010966289.1	ABC-F family ATP-binding cassette domain-containing protein	83.7	27.8	34.2
MGA_243	LOCUS_02390	sequence1:278021..279799(+)	partial			WP_010715021.1	energy-coupling factor ABC transporter ATP-binding protein	59.1	77.7	23.7
MGA_246	LOCUS_02420	sequence1:281582..283369(+)	partial			WP_010989452.1	class 1 internalin InlF	86.4	63.3	40.1
MGA_251	LOCUS_02470	sequence1:287602..288693(-)	partial			WP_010966554.1	leucine-rich repeat domain-containing protein	51.0	21.8	43.2
MGA_306	LOCUS_03020	sequence1:347590..348333(+)	partial			WP_003243665.1	tRNA nuclease WapA	59.5	6.2	56.4
MGA_309	LOCUS_03050	sequence1:349361..349807(+)	partial			WP_003243665.1	tRNA nuclease WapA	62.2	4.5	40.2
MGA_317	LOCUS_03130	sequence1:355094..355888(+)	partial			WP_003243665.1	tRNA nuclease WapA	90.9	10.4	41.2
MGA_335	LOCUS_03310	sequence1:372280..372534(+)	frameshift		372516	WP_009914285.1	NUDIX domain-containing protein	95.2	47.3	81.2
MGA_346	LOCUS_03420	sequence1:380208..380762(+)	frameshift		380708	WP_086953915.1	IS3-like element ISEnfa3 family transposase	87.0	34.5	35.8
MGA_347	LOCUS_03430	sequence1:380804..381601(+)	frameshift		380747	WP_141741171.1	IS3 family transposase	98.5	55.2	61.8
MGA_372	LOCUS_03680	sequence1:403385..404221(+)	frameshift		404218	WP_009931069.1	ABC transporter permease	98.6	71.6	41.4
MGA_373	LOCUS_03690	sequence1:404239..404562(+)	frameshift		404218	WP_003404919.1	ABC transporter permease	100.0	26.6	56.1
MGA_382	LOCUS_03780	sequence1:408883..410076(+)	partial			WP_010989452.1	class 1 internalin InlF	72.8	35.0	43.3
MGA_391	LOCUS_03870	sequence1:418978..420501(+)	partial			WP_010989463.1	GW domain-containing class 2 internalin InlB	63.1	49.7	43.1
MGA_394	LOCUS_03900	sequence1:426975..430124(+)	partial			WP_010989452.1	class 1 internalin InlF	58.3	77.7	45.9
MGA_399	LOCUS_03950	sequence1:436782..437108(+)	partial			WP_003722994.1	hypothetical protein	74.1	76.9	75.0
MGA_413	LOCUS_04090	sequence1:452306..452674(+)	partial			WP_011970620.1	NAD(P)-binding domain-containing protein	95.1	48.8	45.4
MGA_446	LOCUS_04420	sequence1:491254..491484(+)	partial			WP_002666293.1	CRISPR-associated endonuclease Cas2	100.0	74.3	42.1
MGA_461	LOCUS_04470	sequence1:501013..503442(+)	partial			WP_008766599.1	glycoside hydrolase family 38 C-terminal domain-containing protein	96.4	63.9	25.2
MGA_473	LOCUS_04590	sequence1:517313..517957(+)	partial			WP_010989504.1	methyltransferase domain-containing protein	86.4	67.8	80.2
MGA_474	LOCUS_04600	sequence1:517926..518723(-)	frameshift		518779	WP_141741171.1	IS3 family transposase	98.5	55.2	62.2
MGA_475	LOCUS_04610	sequence1:518765..519319(-)	frameshift		518818	WP_086953915.1	IS3-like element ISEnfa3 family transposase	87.0	34.5	35.8
MGA_476	LOCUS_04620	sequence1:519471..519647(+)	partial			WP_010989504.1	methyltransferase domain-containing protein	100.0	21.0	79.3
MGA_493	LOCUS_04790	sequence1:536321..536530(+)	partial			WP_010989513.1	WxL domain-containing protein	100.0	24.6	73.9
MGA_513	LOCUS_04990	sequence1:558592..558843(+)	partial			WP_002287936.1	recombinase family protein	84.3	34.3	45.7
MGA_514	LOCUS_05000	sequence1:558969..559445(+)	frameshift,internal_stop_codon	559443..559445(+)	559577	WP_003131380.1	glycosyltransferase family 2 protein	40.5	14.0	60.9
MGA_515	LOCUS_05010	sequence1:559579..559740(+)	frameshift,internal_stop_codon	559443..559445(+)	559577	WP_003131380.1	glycosyltransferase family 2 protein	96.2	11.5	56.9
MGA_561	LOCUS_05470	sequence1:610541..611884(-)	partial			WP_003147473.1	Ig-like domain-containing protein	68.5	13.1	29.7
MGA_593	LOCUS_05790	sequence1:638921..639271(-)	partial			WP_010989586.1	IS3 family transposase	85.3	35.6	72.7
MGA_596	LOCUS_05820	sequence1:641198..641575(-)	frameshift,internal_stop_codon	641197..641199(-),641082..641084(-)	641097,641042,640925,641583	WP_010989531.1	DUF6044 family protein	100.0	22.4	88.0
MGA_608	LOCUS_05940	sequence1:663701..664498(-)	frameshift		664554	WP_141741171.1	IS3 family transposase	98.5	55.2	61.8
MGA_609	LOCUS_05950	sequence1:664540..665094(-)	frameshift		664593	WP_086953915.1	IS3-like element ISEnfa3 family transposase	87.0	34.5	35.8
MGA_623	LOCUS_06090	sequence1:677963..678112(-)	partial			WP_012775654.1	site-specific integrase	95.9	12.4	61.7
MGA_624	LOCUS_06100	sequence1:678534..679046(-)	partial			WP_000713491.1	lipoprotein	63.5	66.7	33.0
MGA_655	LOCUS_06410	sequence1:706300..706854(+)	frameshift		706800	WP_086953915.1	IS3-like element ISEnfa3 family transposase	87.0	34.5	35.8
MGA_656	LOCUS_06420	sequence1:706896..707693(+)	frameshift		706839	WP_141741171.1	IS3 family transposase	98.5	55.2	61.8
MGA_719	LOCUS_07050	sequence1:764050..766215(+)	partial			WP_010989427.1	class 1 internalin InlI	77.0	32.6	31.6
MGA_772	LOCUS_07580	sequence1:818499..820145(+)	partial			WP_011031530.1	hypothetical protein	43.1	27.3	26.8
MGA_777	LOCUS_07630	sequence1:823663..823965(+)	frameshift		823959	WP_009930419.1	hypothetical protein	99.0	73.9	76.8
MGA_784	LOCUS_07700	sequence1:829227..829814(+)	partial			WP_003732226.1	hypothetical protein	51.8	54.5	49.5
MGA_818	LOCUS_08040	sequence1:861940..863616(+)	partial			WP_010989982.1	lmo2396 family class 1 internalin	75.1	44.4	31.4
MGA_828	LOCUS_08140	sequence1:872183..876613(-)	frameshift		876593	WP_010989427.1	class 1 internalin InlI	97.2	83.5	32.9
MGA_829	LOCUS_08150	sequence1:876576..877106(-)	frameshift		876593	WP_010989427.1	class 1 internalin InlI	97.2	11.4	29.6
MGA_854	LOCUS_08400	sequence1:911081..913111(+)	partial			WP_010989982.1	lmo2396 family class 1 internalin	68.0	47.1	31.6
MGA_855	LOCUS_08410	sequence1:913400..914968(+)	partial			WP_010989982.1	lmo2396 family class 1 internalin	27.8	16.2	38.8
MGA_874	LOCUS_08600	sequence1:933603..933788(+)	partial			WP_010989600.1	amidohydrolase family protein	100.0	18.4	85.2
MGA_875	LOCUS_08610	sequence1:933803..934132(+)	partial			WP_003721436.1	DUF2316 family protein	67.9	71.8	68.9
MGA_880	LOCUS_08660	sequence1:940225..941022(-)	frameshift		941078	WP_141741171.1	IS3 family transposase	98.5	55.2	60.7
MGA_881	LOCUS_08670	sequence1:941064..941618(-)	frameshift		941117,941110	WP_140860145.1	IS3 family transposase	91.8	36.5	30.1
MGA_882	LOCUS_08680	sequence1:942141..942278(+)	frameshift,internal_stop_codon	942059..942061(+),942029..942031(+)	941944,942100,942229	WP_014601346.1	T7SS effector LXG polymorphic toxin	64.4	8.5	79.3
MGA_883	LOCUS_08690	sequence1:942271..942558(+)	partial			WP_010989601.1	MFS transporter	49.5	12.1	76.6
MGA_1017	LOCUS_10030	sequence1:1067343..1067561(-)	partial			WP_003722866.1	YkvS family protein	83.3	63.8	98.3
MGA_1084	LOCUS_10700	sequence1:1130290..1132305(-)	partial			WP_010990014.1	autolysin Ami	40.7	31.2	47.3
MGA_1094	LOCUS_10800	sequence1:1145060..1147336(+)	partial			WP_003243594.1	beta-N-acetylglucosaminidase LytD	40.1	32.4	44.4
MGA_1098	LOCUS_10840	sequence1:1151408..1153759(+)	partial			WP_010989657.1	CDP-glycerol glycerophosphotransferase family protein	51.5	56.0	43.6
MGA_1101	LOCUS_10870	sequence1:1155701..1157074(+)	partial			WP_009968267.1	glycosyltransferase family 2 protein	70.5	71.5	41.8
MGA_1102	LOCUS_10880	sequence1:1157096..1158250(+)	partial			WP_003243463.1	teichoic acid poly(glycerol phosphate) polymerase	99.0	51.3	57.0
MGA_1211	LOCUS_11970	sequence1:1247969..1248184(+)	frameshift		1248166	WP_109983297.1	IS200/IS605 family transposase	93.0	41.5	78.8
MGA_1212	LOCUS_11980	sequence1:1248226..1248441(+)	frameshift		1248166	WP_109983297.1	IS200/IS605 family transposase	97.2	43.4	76.8
MGA_1214	LOCUS_12000	sequence1:1249497..1250339(+)	frameshift		1249455	WP_088792927.1	IS3-like element IS981 family transposase	92.9	70.3	37.4
MGA_1243	LOCUS_12290	sequence1:1280275..1280958(+)	partial			WP_003722566.1	phage antirepressor Ant	81.9	72.1	60.4
MGA_1247	LOCUS_12330	sequence1:1283758..1284669(+)	partial			WP_011101092.1	recombinase RecT	63.0	67.1	29.6
MGA_1248	LOCUS_12340	sequence1:1284688..1285602(+)	partial			WP_010989959.1	phage replisome organizer N-terminal domain-containing protein	18.4	18.2	69.5
MGA_1257	LOCUS_12430	sequence1:1288694..1288999(+)	frameshift		1288984	WP_003732219.1	protein LmaD	96.0	68.3	47.4
MGA_1276	LOCUS_12620	sequence1:1299109..1299795(+)	partial			WP_003727790.1	Ig-like domain-containing protein	39.0	79.1	42.7
MGA_1279	LOCUS_12650	sequence1:1300595..1305385(+)	partial			WP_010905926.1	phage tail tape measure protein	58.7	61.1	24.1
MGA_1290	LOCUS_12760	sequence1:1312857..1313576(+)	partial			WP_011461870.1	DUF4065 domain-containing protein	61.1	44.1	36.7
MGA_1292	LOCUS_12780	sequence1:1314335..1315756(+)	partial			WP_010989355.1	T7SS effector LXG polymorphic toxin	67.2	69.0	48.0
MGA_1298	LOCUS_12840	sequence1:1321839..1325096(+)	partial			WP_010990014.1	autolysin Ami	57.9	69.5	53.7
MGA_1301	LOCUS_12870	sequence1:1328142..1329272(+)	partial			WP_010989812.1	class 3 internalin InlC	36.2	45.9	48.5
MGA_1307	LOCUS_12930	sequence1:1337050..1337226(-)	frameshift		1337248,1337218	WP_009931781.1	IS3 family transposase	94.8	54.5	85.5
MGA_1412	LOCUS_13980	sequence1:1438677..1438898(-)	partial			WP_009931733.1	competence protein ComG	90.4	63.8	50.7
MGA_1493	LOCUS_14790	sequence1:1522364..1522960(-)	internal_stop_codon	1522364..1522366(-)		WP_010990078.1	SMUG2 DNA glycosylase family protein	100.0	84.3	71.7
MGA_1520	LOCUS_15060	sequence1:1560930..1561727(-)	frameshift		1561783	WP_141741171.1	IS3 family transposase	98.5	55.2	61.8
MGA_1521	LOCUS_15070	sequence1:1561769..1562323(-)	frameshift		1561822	WP_086953915.1	IS3-like element ISEnfa3 family transposase	87.0	34.5	35.8
MGA_1612	LOCUS_15980	sequence1:1652530..1653084(+)	frameshift		1653030	WP_086953915.1	IS3-like element ISEnfa3 family transposase	87.0	34.5	35.8
MGA_1613	LOCUS_15990	sequence1:1653126..1653923(+)	frameshift		1653069	WP_141741171.1	IS3 family transposase	97.7	54.8	61.9
MGA_1643	LOCUS_16290	sequence1:1682220..1682579(-)	partial			WP_010989739.1	A24 family peptidase	100.0	50.4	58.8
MGA_1669	LOCUS_16550	sequence1:1716180..1716923(-)	frameshift		1716934	WP_010989748.1	CBS-HotDog domain-containing transcription factor YtoI	100.0	56.5	95.1
MGA_1670	LOCUS_16560	sequence1:1716908..1717507(-)	frameshift		1716937	WP_010989748.1	CBS-HotDog domain-containing transcription factor YtoI	94.5	43.0	97.9
MGA_1755	LOCUS_17410	sequence1:1813018..1814466(-)	partial			WP_002287092.1	glucose PTS transporter subunit IIA	99.0	72.6	57.7
MGA_1779	LOCUS_17650	sequence1:1842120..1842638(-)	internal_stop_codon	1842894..1842896(-)		WP_010989784.1	MFS transporter	99.4	43.7	75.4
MGA_1781	LOCUS_17670	sequence1:1842894..1843295(-)	internal_stop_codon	1842894..1842896(-)		WP_010989784.1	MFS transporter	100.0	34.0	91.7
MGA_1818	LOCUS_18010	sequence1:1880375..1880869(-)	internal_stop_codon	1880882..1880884(-)		WP_005092776.1	SDR family oxidoreductase	91.5	51.2	48.7
MGA_1819	LOCUS_18020	sequence1:1880882..1881259(-)	internal_stop_codon	1880882..1880884(-)		WP_011141439.1	SDR family oxidoreductase	100.0	41.8	52.0
MGA_1820	LOCUS_18030	sequence1:1881278..1881751(-)	partial			WP_011022043.1	MarR family transcriptional regulator	70.1	71.9	28.2
MGA_1832	LOCUS_18150	sequence1:1891940..1893424(-)	partial			WP_011837107.1	ATP-binding protein	43.7	40.0	34.4
MGA_1895	LOCUS_18760	sequence1:1966154..1967032(-)	partial			WP_010940939.1	LysR family transcriptional regulator	66.1	62.9	27.8
MGA_1903	LOCUS_18840	sequence1:1973147..1975513(-)	partial			WP_010989462.1	class 1 internalin InlA	60.7	59.6	39.7
MGA_1916	LOCUS_18970	sequence1:1983259..1986033(-)	partial			WP_010989814.1	LPXTG cell wall anchor domain-containing protein	24.5	25.1	88.5
MGA_1949	LOCUS_19300	sequence1:2020985..2022409(-)	partial			WP_010989431.1	LXG domain-containing protein	54.4	53.0	34.5
MGA_1993	LOCUS_19740	sequence1:2060447..2061799(-)	partial			WP_010965588.1	M4 family metallopeptidase	29.8	16.0	48.5
MGA_2038	LOCUS_20190	sequence1:2104273..2104764(+)	frameshift		2104189	WP_003723021.1	GGDEF domain-containing protein	72.4	31.2	79.7
MGA_2104	LOCUS_20850	sequence1:2173831..2173968(+)	partial			WP_003727979.1	hypothetical protein	71.1	71.1	96.9
MGA_2117	LOCUS_20980	sequence1:2187578..2188132(+)	frameshift		2188078	WP_086953915.1	IS3-like element ISEnfa3 family transposase	87.0	34.5	35.8
MGA_2118	LOCUS_20990	sequence1:2188174..2188971(+)	frameshift		2188117	WP_141741171.1	IS3 family transposase	98.5	55.2	61.8
MGA_2132	LOCUS_21130	sequence1:2201113..2201313(+)	frameshift		2201059,2201263	WP_165992825.1	IS3 family transposase	83.3	14.4	67.3
MGA_2133	LOCUS_21140	sequence1:2201427..2202173(+)	frameshift		2201262	WP_165992825.1	IS3 family transposase	100.0	65.1	51.4
MGA_2137	LOCUS_21180	sequence1:2203764..2205239(-)	partial			WP_000056051.1	ribonuclease	43.8	39.8	40.6
MGA_2141	LOCUS_21220	sequence1:2206428..2206628(+)	frameshift		2206578,2206374	WP_165992825.1	IS3 family transposase	83.3	14.4	67.3
MGA_2142	LOCUS_21230	sequence1:2206742..2207488(+)	frameshift		2206577	WP_165992825.1	IS3 family transposase	100.0	65.1	51.4
MGA_2147	LOCUS_21280	sequence1:2212945..2213601(-)	frameshift		2213630	WP_003723174.1	response regulator transcription factor	100.0	44.1	90.4
MGA_2148	LOCUS_21290	sequence1:2213619..2214428(-)	frameshift		2213630	WP_003723174.1	response regulator transcription factor	98.9	53.8	80.5
MGA_2151	LOCUS_21320	sequence1:2216487..2216900(-)	partial			WP_003731998.1	sensor histidine kinase	89.1	21.1	86.9
MGA_2167	LOCUS_21480	sequence1:2236390..2236563(+)	frameshift		2236394,2236364	WP_009931781.1	IS3 family transposase	96.5	54.5	85.5
MGA_2193	LOCUS_21740	sequence1:2263289..2264086(-)	frameshift		2264142	WP_141741171.1	IS3 family transposase	98.5	55.2	62.2
MGA_2194	LOCUS_21750	sequence1:2264128..2264682(-)	frameshift		2264181	WP_086953915.1	IS3-like element ISEnfa3 family transposase	87.0	34.5	35.8
MGA_2216	LOCUS_21970	sequence1:2281540..2281827(-)	partial			WP_003723950.1	choloylglycine hydrolase	63.2	18.5	73.3
MGA_2217	LOCUS_21980	sequence1:2281889..2283553(-)	frameshift		2281835	WP_010989462.1	class 1 internalin InlA	78.2	54.1	40.9
MGA_2226	LOCUS_22070	sequence1:2291410..2292186(-)	partial			WP_001093562.1	DM13 domain-containing protein	36.4	64.4	52.1
MGA_2237	LOCUS_22180	sequence1:2299710..2299904(-)	frameshift		2299748	WP_010989890.1	GyrI-like domain-containing protein	84.4	26.0	72.2
MGA_2325	LOCUS_23060	sequence1:2388877..2389566(-)	frameshift		2389562	WP_003722298.1	diguanylate cyclase	98.7	63.3	80.1
MGA_2390	LOCUS_23710	sequence1:2466160..2466957(-)	frameshift		2467013	WP_141741171.1	IS3 family transposase	98.5	55.2	62.2
MGA_2391	LOCUS_23720	sequence1:2466999..2467553(-)	frameshift		2467052	WP_086953915.1	IS3-like element ISEnfa3 family transposase	87.0	34.5	35.8
MGA_2395	LOCUS_23760	sequence1:2469691..2469915(-)	frameshift,internal_stop_codon	2469987..2469989(-)	2470025	WP_003723377.1	VOC family protein	100.0	56.9	74.3
MGA_2418	LOCUS_23990	sequence1:2494148..2494384(-)	frameshift		2494418	WP_003723667.1	IDEAL domain-containing protein	100.0	66.1	89.7
MGA_2498	LOCUS_24760	sequence1:2575893..2576105(-)	partial			WP_003723326.1	thioredoxin family protein	100.0	74.5	70.0
MGA_2544	LOCUS_25220	sequence1:2624728..2627025(-)	partial			WP_010990014.1	autolysin Ami	41.3	35.1	49.7
MGA_2558	LOCUS_25360	sequence1:2643387..2643689(+)	partial			WP_010989987.1	hypothetical protein	99.0	54.1	66.7
MGA_2615	LOCUS_25930	sequence1:2700201..2700689(-)	partial			WP_003732518.1	F0F1 ATP synthase subunit A	100.0	68.1	94.4
MGA_2616	LOCUS_25940	sequence1:2700924..2701145(-)	partial			WP_010990010.1	ATP synthase subunit I	100.0	55.3	90.4
MGA_2622	LOCUS_26000	sequence1:2707300..2707947(-)	frameshift		2707990	WP_010990011.1	peptide chain release factor N(5)-glutamine methyltransferase	100.0	76.0	84.2
MGA_2623	LOCUS_26010	sequence1:2707970..2708152(-)	frameshift		2707990	WP_010990011.1	peptide chain release factor N(5)-glutamine methyltransferase	100.0	21.2	83.3
MGA_2749	LOCUS_27250	sequence1:2824650..2826116(+)	partial			WP_010990081.1	class 1 internalin InlJ	56.6	30.3	31.5
MGA_2805	LOCUS_27810	sequence1:2880649..2880852(-)	partial			WP_003727657.1	DUF3188 domain-containing protein	74.6	83.3	82.0
MGA_2823	LOCUS_27990	sequence1:2899663..2901090(-)	partial			WP_010989355.1	T7SS effector LXG polymorphic toxin	72.0	72.5	47.6
MGA_2829	LOCUS_28050	sequence1:2904749..2905519(-)	partial			WP_001106654.1	hypothetical protein	61.3	79.9	34.6
MGA_2893	LOCUS_28690	sequence1:2972177..2974852(+)	partial			WP_000791146.1	M4 family metallopeptidase	34.7	34.5	34.4
MGA_2894	LOCUS_28700	sequence1:2975340..2979923(-)	partial			WP_010905155.1	SpaA isopeptide-forming pilin-related protein	95.0	73.3	36.7
