{ "type": "genome", "identifier": "GCF_900637855.1", "organism": "Neisseria animaloris", "title": "Neisseria animaloris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900637855.1", "bioproject": "PRJNA224116", "biosample": "SAMEA48401668", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "326522", "species_taxid": "326522", "organism_name": "Neisseria animaloris", "infraspecific_name": "strain=NCTC12228", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/20", "asm_name": "52683_F03", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900637855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/637/855/GCF_900637855.1_52683_F03", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2338721", "genome_size_ungapped": "2338721", "gc_percent": "49.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900637855.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2224", "protein_coding_gene_count": "2125", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-20", "dateModified": "2018-12-20", "datePublished": "2018-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria animaloris" ], "sample_taxid": [ "326522" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.655 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2338721", "Number of Sequences": "1", "Longest Sequences (bp)": "2338721", "N50 (bp)": "2338721", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.3", "Number of CDSs": "2137", "Average Protein Length": "307.5", "Coding Ratio (%)": "84.3", "Number of rRNAs": "12", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neisseria animaloris", "strain": "strain=NCTC12228", "accession": "GCA_900637855.1", "taxid": 326522, "species_taxid": 326522, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 777, "total_fragments": 779, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria animaloris", "strain": "strain=DSM 21642", "accession": "GCA_002108605.1", "taxid": 326522, "species_taxid": 326522, "relation_to_type": "type", "validated": true, "ani": 99.9707, "matched_fragments": 759, "total_fragments": 779, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria dumasiana", "strain": "strain=LMG 30012", "accession": "GCA_022870885.1", "taxid": 1931275, "species_taxid": 1931275, "relation_to_type": "type", "validated": true, "ani": 87.2882, "matched_fragments": 476, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dumasiana", "strain": "strain=93087", "accession": "GCA_002108505.1", "taxid": 1931275, "species_taxid": 1931275, "relation_to_type": "type", "validated": true, "ani": 87.0815, "matched_fragments": 462, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria zoodegmatis", "strain": "strain=NCTC12230", "accession": "GCA_900187305.1", "taxid": 326523, "species_taxid": 326523, "relation_to_type": "type", "validated": true, "ani": 86.5632, "matched_fragments": 473, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria zoodegmatis", "strain": "strain=DSM 21643", "accession": "GCA_002108575.1", "taxid": 326523, "species_taxid": 326523, "relation_to_type": "type", "validated": true, "ani": 86.4618, "matched_fragments": 465, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria weaveri", "strain": "strain=LMG 5135", "accession": "GCA_000224255.2", "taxid": 28091, "species_taxid": 28091, "relation_to_type": "type", "validated": true, "ani": 84.1084, "matched_fragments": 349, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Uruburuella testudinis", "strain": "strain=CCUG 63373m", "accession": "GCA_022870865.1", 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779, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900637855.1", "gtdb_species": "s__Neisseria animaloris", "ani": 100.0, "matched_fragments": 778, "total_fragments": 779, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.59", "min_intra_species_ani": "98.11", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_002108505.1", "gtdb_species": "s__Neisseria dumasiana", "ani": 87.0571, "matched_fragments": 465, "total_fragments": 779, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.54", 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