{ "type": "genome", "identifier": "GCF_900637865.1", "organism": "Legionella adelaidensis", "title": "Legionella adelaidensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900637865.1", "bioproject": "PRJNA224116", "biosample": "SAMEA48402418", "wgs_master": "na", "refseq_category": "na", "taxid": "45056", "species_taxid": "45056", "organism_name": "Legionella adelaidensis", "infraspecific_name": "strain=NCTC12735", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/20", "asm_name": "52683_G03", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900637865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/637/865/GCF_900637865.1_52683_G03", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2094483", "genome_size_ungapped": "2094483", "gc_percent": "39.000000", "replicon_count": "29", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-13", "total_gene_count": "1981", "protein_coding_gene_count": "1888", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-20", "dateModified": "2018-12-20", "datePublished": "2018-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella adelaidensis" ], "sample_taxid": [ "45056" ], "sample_host_organism": [ "environmental" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Adelaide" ], "sample_host_location_id": [], "data_size": "0.597 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2094483", "Number of Sequences": "29", "Longest Sequences (bp)": "451287", "N50 (bp)": "188989", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.9", "Number of CDSs": "1889", "Average Protein Length": "325.5", "Coding Ratio (%)": "88.1", "Number of rRNAs": "9", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella adelaidensis", "strain": "strain=NCTC12735", "accession": "GCA_900637865.1", "taxid": 45056, "species_taxid": 45056, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 681, "total_fragments": 684, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella adelaidensis", "strain": "strain=1762-AUS-E", "accession": "GCA_001467055.1", "taxid": 45056, "species_taxid": 45056, "relation_to_type": "type", "validated": true, "ani": 99.9561, "matched_fragments": 666, "total_fragments": 684, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella adelaidensis", "strain": "strain=1762-AUS-E", "accession": "GCA_900639835.1", "taxid": 45056, "species_taxid": 45056, "relation_to_type": "type", "validated": true, "ani": 99.943, "matched_fragments": 661, "total_fragments": 684, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella brunensis", "strain": "strain=ATCC 43878", "accession": "GCA_001467025.1", "taxid": 29422, "species_taxid": 29422, "relation_to_type": "type", "validated": true, "ani": 78.2506, "matched_fragments": 60, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella oakridgensis", "strain": "strain=Oak Ridge-10", "accession": "GCA_001467925.1", "taxid": 29423, "species_taxid": 29423, "relation_to_type": "type", "validated": true, "ani": 78.1953, "matched_fragments": 63, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella oakridgensis", "strain": "strain=ATCC 33761", "accession": "GCA_001648605.1", "taxid": 29423, "species_taxid": 29423, "relation_to_type": "type", "validated": true, "ani": 77.9947, "matched_fragments": 65, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella brunensis", "strain": "strain=441-1", "accession": "GCA_900639795.1", "taxid": 29422, "species_taxid": 29422, "relation_to_type": "type", "validated": true, "ani": 77.6502, "matched_fragments": 58, "total_fragments": 684, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella fairfieldensis", "strain": "strain=ATCC 49588", "accession": "GCA_000621525.1", 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"min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001467895.1", "gtdb_species": "s__Tatlockia nautarum", "ani": 78.1771, "matched_fragments": 55, "total_fragments": 684, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001467695.1", "gtdb_species": "s__Legionella gratiana", "ani": 77.7402, "matched_fragments": 66, "total_fragments": 684, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", 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